miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
226 3' -53.4 AC_000008.1 + 32783 0.66 0.669644
Target:  5'- -aGCAGGUGaCAGUu-GCCGUccgAGCa -3'
miRNA:   3'- ugCGUCCAC-GUCGucCGGUAuaaUCG- -5'
226 3' -53.4 AC_000008.1 + 9911 0.66 0.668479
Target:  5'- gACGCAGGcgGUaagcuccgcauuuGGCGGGCgGgAUUGGUc -3'
miRNA:   3'- -UGCGUCCa-CG-------------UCGUCCGgUaUAAUCG- -5'
226 3' -53.4 AC_000008.1 + 12160 0.66 0.65798
Target:  5'- cGCGCccuGGagGCAGCugGGGCCGgaccugGGCu -3'
miRNA:   3'- -UGCGu--CCa-CGUCG--UCCGGUauaa--UCG- -5'
226 3' -53.4 AC_000008.1 + 21973 0.66 0.65798
Target:  5'- gACGaCGGGUG-GGCGGGCgCGggccUGGCa -3'
miRNA:   3'- -UGC-GUCCACgUCGUCCG-GUaua-AUCG- -5'
226 3' -53.4 AC_000008.1 + 32083 0.66 0.65798
Target:  5'- gGCGguGGcUGCAGC-GGCUgaAgcGGCg -3'
miRNA:   3'- -UGCguCC-ACGUCGuCCGGuaUaaUCG- -5'
226 3' -53.4 AC_000008.1 + 12680 0.66 0.634581
Target:  5'- gGCGCAGcGUgagcgcgcgcaGCAGCAGGgCAaccugGGCu -3'
miRNA:   3'- -UGCGUC-CA-----------CGUCGUCCgGUauaa-UCG- -5'
226 3' -53.4 AC_000008.1 + 10003 0.66 0.622872
Target:  5'- cUGCGGcG-GCGGCGgaguuuGGCCGUAggUGGCg -3'
miRNA:   3'- uGCGUC-CaCGUCGU------CCGGUAUa-AUCG- -5'
226 3' -53.4 AC_000008.1 + 19460 0.67 0.599493
Target:  5'- -gGCGGGUGCGcacgggcacgcGCAGGCCGcuaaccgAGUc -3'
miRNA:   3'- ugCGUCCACGU-----------CGUCCGGUauaa---UCG- -5'
226 3' -53.4 AC_000008.1 + 9488 0.67 0.598327
Target:  5'- gGCGCAuggucucGGUGaCGGCGcGGCCGUucucgcgggGGCg -3'
miRNA:   3'- -UGCGU-------CCAC-GUCGU-CCGGUAuaa------UCG- -5'
226 3' -53.4 AC_000008.1 + 9741 0.67 0.587845
Target:  5'- -gGCGGGcgGCAGCGGGCgGcggucgggguUGUuucUGGCg -3'
miRNA:   3'- ugCGUCCa-CGUCGUCCGgU----------AUA---AUCG- -5'
226 3' -53.4 AC_000008.1 + 11755 0.67 0.580876
Target:  5'- aGCGgGGGUGCcucgacggggaagguGGUAGGCgc-GUUGGCg -3'
miRNA:   3'- -UGCgUCCACG---------------UCGUCCGguaUAAUCG- -5'
226 3' -53.4 AC_000008.1 + 17433 0.67 0.576239
Target:  5'- -gGguGGUG-GGCAGGCCuugcuUUAGUg -3'
miRNA:   3'- ugCguCCACgUCGUCCGGuau--AAUCG- -5'
226 3' -53.4 AC_000008.1 + 15056 0.67 0.564686
Target:  5'- gGCGCAGGcgGCAGCAacaGCaGUGgcAGCg -3'
miRNA:   3'- -UGCGUCCa-CGUCGUc--CGgUAUaaUCG- -5'
226 3' -53.4 AC_000008.1 + 8929 0.67 0.561231
Target:  5'- cACGguGGcgGCGaggucguuggaaauGCGGGCCAUG--AGCu -3'
miRNA:   3'- -UGCguCCa-CGU--------------CGUCCGGUAUaaUCG- -5'
226 3' -53.4 AC_000008.1 + 13270 0.67 0.553194
Target:  5'- cGCGCAGG-GCGG-AGGCCccaacuGCg -3'
miRNA:   3'- -UGCGUCCaCGUCgUCCGGuauaauCG- -5'
226 3' -53.4 AC_000008.1 + 22677 0.67 0.553194
Target:  5'- aGCGcCGGGUGguGCAcgcuGGCCAgcac-GCu -3'
miRNA:   3'- -UGC-GUCCACguCGU----CCGGUauaauCG- -5'
226 3' -53.4 AC_000008.1 + 20110 0.68 0.530431
Target:  5'- -gGCAGGUGCGGCGucuGGCgucaGUAaUGGUc -3'
miRNA:   3'- ugCGUCCACGUCGU---CCGg---UAUaAUCG- -5'
226 3' -53.4 AC_000008.1 + 9200 0.68 0.530431
Target:  5'- cCGCcGGUGCAGUauGGGCUGUAgagaugacggUAGUa -3'
miRNA:   3'- uGCGuCCACGUCG--UCCGGUAUa---------AUCG- -5'
226 3' -53.4 AC_000008.1 + 8521 0.68 0.508019
Target:  5'- cAC-CAGG-GCAGCGGGCCAa------ -3'
miRNA:   3'- -UGcGUCCaCGUCGUCCGGUauaaucg -5'
226 3' -53.4 AC_000008.1 + 18219 0.68 0.496963
Target:  5'- aACGgAGGcgGCAGgugaGGGCCAUAUcuGCa -3'
miRNA:   3'- -UGCgUCCa-CGUCg---UCCGGUAUAauCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.