miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
226 5' -59.2 AC_000008.1 + 23742 0.66 0.39868
Target:  5'- gCGUCGGCUUggGGCCCaGCgcaggUCAGCg- -3'
miRNA:   3'- aGCGGCUGGA--UCGGGaCGa----AGUCGgc -5'
226 5' -59.2 AC_000008.1 + 1831 0.66 0.36632
Target:  5'- aCGcCCGcACCUGGUuuUGCUUCAGgaaauaugacuacguCCGg -3'
miRNA:   3'- aGC-GGC-UGGAUCGggACGAAGUC---------------GGC- -5'
226 5' -59.2 AC_000008.1 + 20674 0.67 0.345774
Target:  5'- -gGgCGGCagcuucGGCCgCUGCUUCGGCCu -3'
miRNA:   3'- agCgGCUGga----UCGG-GACGAAGUCGGc -5'
226 5' -59.2 AC_000008.1 + 33713 0.67 0.321273
Target:  5'- cCGCCGccGCCUGGCuuccuCCUGCUgCuGCUGc -3'
miRNA:   3'- aGCGGC--UGGAUCG-----GGACGAaGuCGGC- -5'
226 5' -59.2 AC_000008.1 + 17524 0.68 0.283375
Target:  5'- gUCGCCGucGCC-AGCCCgUGCU--GGCCc -3'
miRNA:   3'- -AGCGGC--UGGaUCGGG-ACGAagUCGGc -5'
226 5' -59.2 AC_000008.1 + 26120 0.68 0.262383
Target:  5'- cCGCCG-CCgcAGCCCUaucaGCagCAGCCGc -3'
miRNA:   3'- aGCGGCuGGa-UCGGGA----CGaaGUCGGC- -5'
226 5' -59.2 AC_000008.1 + 3768 0.69 0.230229
Target:  5'- aCGCCGuuggagacugcaGCCUccGCCgCcGCUUCAGCCGc -3'
miRNA:   3'- aGCGGC------------UGGAu-CGG-GaCGAAGUCGGC- -5'
226 5' -59.2 AC_000008.1 + 5408 0.75 0.092035
Target:  5'- cUGCCGGuCUUcGCCCUGCgcgUCGGCCa -3'
miRNA:   3'- aGCGGCU-GGAuCGGGACGa--AGUCGGc -5'
226 5' -59.2 AC_000008.1 + 12575 0.77 0.068887
Target:  5'- -gGCCGGCCUGGUCuacgacgcgCUGCUUCAGCgCGu -3'
miRNA:   3'- agCGGCUGGAUCGG---------GACGAAGUCG-GC- -5'
226 5' -59.2 AC_000008.1 + 23322 0.77 0.059348
Target:  5'- -gGCCGGCCUcgucgggccggauGGCCCUGuUUUCGGCCa -3'
miRNA:   3'- agCGGCUGGA-------------UCGGGAC-GAAGUCGGc -5'
226 5' -59.2 AC_000008.1 + 25802 1.09 0.000209
Target:  5'- gUCGCCGACCUAGCCCUGCUUCAGCCGa -3'
miRNA:   3'- -AGCGGCUGGAUCGGGACGAAGUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.