miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2260 5' -54.4 NC_001405.1 + 17711 0.66 0.596254
Target:  5'- uGCACcguAGGaGGGGCaugGCCgGCCACg -3'
miRNA:   3'- -CGUGau-UUCgUUCCGga-CGGgUGGUG- -5'
2260 5' -54.4 NC_001405.1 + 18286 0.66 0.584702
Target:  5'- cCGCUAAuGCcaGAGGCCagGCCaucUACCACc -3'
miRNA:   3'- cGUGAUUuCG--UUCCGGa-CGG---GUGGUG- -5'
2260 5' -54.4 NC_001405.1 + 10095 0.66 0.584702
Target:  5'- cGCGCUc-GGCuaauauGGCCUGCUgCACCuGCg -3'
miRNA:   3'- -CGUGAuuUCGuu----CCGGACGG-GUGG-UG- -5'
2260 5' -54.4 NC_001405.1 + 24753 0.66 0.577791
Target:  5'- gGCACUucgucGAGCGAGGCgaUaucagguaugacagcGCCCuGCCGCa -3'
miRNA:   3'- -CGUGAu----UUCGUUCCGg-A---------------CGGG-UGGUG- -5'
2260 5' -54.4 NC_001405.1 + 9925 0.66 0.573193
Target:  5'- aGC-CUGGGGCAuGGCCgaccGCCUGCgCAUu -3'
miRNA:   3'- -CGuGAUUUCGUuCCGGa---CGGGUG-GUG- -5'
2260 5' -54.4 NC_001405.1 + 15582 0.67 0.550348
Target:  5'- uGCACg--GGCAAcagcucGGC--GCCCACCACc -3'
miRNA:   3'- -CGUGauuUCGUU------CCGgaCGGGUGGUG- -5'
2260 5' -54.4 NC_001405.1 + 17801 0.67 0.516639
Target:  5'- cGCACgac-GCAugccgcccgucAGGCCgugGCCgGCCAUg -3'
miRNA:   3'- -CGUGauuuCGU-----------UCCGGa--CGGgUGGUG- -5'
2260 5' -54.4 NC_001405.1 + 13872 0.67 0.505584
Target:  5'- uGCGCaGGAGCAcaGGGaUgUGCCCGgcCCGCg -3'
miRNA:   3'- -CGUGaUUUCGU--UCC-GgACGGGU--GGUG- -5'
2260 5' -54.4 NC_001405.1 + 21439 0.67 0.505584
Target:  5'- gGCACguuGGCGGGguaaGCCUGUCCcUCGCg -3'
miRNA:   3'- -CGUGauuUCGUUC----CGGACGGGuGGUG- -5'
2260 5' -54.4 NC_001405.1 + 8713 0.68 0.451975
Target:  5'- cGCGCgc-AGCAccAGcuCCUGCCCGCgCGCg -3'
miRNA:   3'- -CGUGauuUCGU--UCc-GGACGGGUG-GUG- -5'
2260 5' -54.4 NC_001405.1 + 22637 0.68 0.440599
Target:  5'- gGCGCcgauaucuUGAAGUcgcaguuGGGGCCUccGCCCugCGCg -3'
miRNA:   3'- -CGUG--------AUUUCG-------UUCCGGA--CGGGugGUG- -5'
2260 5' -54.4 NC_001405.1 + 15189 0.7 0.379691
Target:  5'- cGCGCUGAGGcCGAGGCagcggcagaagcugCcGCCC-CCGCu -3'
miRNA:   3'- -CGUGAUUUC-GUUCCG--------------GaCGGGuGGUG- -5'
2260 5' -54.4 NC_001405.1 + 17644 0.7 0.337431
Target:  5'- cGCGCUGuuggcAGCAccaGGGuCCUGCCUccuucgcgaGCCACc -3'
miRNA:   3'- -CGUGAUu----UCGU---UCC-GGACGGG---------UGGUG- -5'
2260 5' -54.4 NC_001405.1 + 5386 0.72 0.259259
Target:  5'- gGUGCUGAAGCGcuGCCggucuucGCCCugCGCg -3'
miRNA:   3'- -CGUGAUUUCGUucCGGa------CGGGugGUG- -5'
2260 5' -54.4 NC_001405.1 + 18316 0.72 0.259259
Target:  5'- uGCACUGccuGGUu-GGCCagGUCCACCACc -3'
miRNA:   3'- -CGUGAUu--UCGuuCCGGa-CGGGUGGUG- -5'
2260 5' -54.4 NC_001405.1 + 25594 0.73 0.219854
Target:  5'- --cCUAGAGCGuucAGGaauuCUGCCCGCCACc -3'
miRNA:   3'- cguGAUUUCGU---UCCg---GACGGGUGGUG- -5'
2260 5' -54.4 NC_001405.1 + 10067 0.75 0.185675
Target:  5'- -gGCUGAAGCAGGGCCagGUCgGCgACa -3'
miRNA:   3'- cgUGAUUUCGUUCCGGa-CGGgUGgUG- -5'
2260 5' -54.4 NC_001405.1 + 12634 0.75 0.173865
Target:  5'- cGCGCUGAAGCAgcgcgucguagaccAGGCCgGCCuCAUCGg -3'
miRNA:   3'- -CGUGAUUUCGU--------------UCCGGaCGG-GUGGUg -5'
2260 5' -54.4 NC_001405.1 + 16275 0.77 0.135055
Target:  5'- uGCGCgguuAAGCAGGGCCg--CCGCCGCg -3'
miRNA:   3'- -CGUGau--UUCGUUCCGGacgGGUGGUG- -5'
2260 5' -54.4 NC_001405.1 + 18441 1.11 0.000419
Target:  5'- gGCACUAAAGCAAGGCCUGCCCACCACc -3'
miRNA:   3'- -CGUGAUUUCGUUCCGGACGGGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.