miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22600 3' -49.9 NC_005091.1 + 5872 0.66 0.955542
Target:  5'- aAAUCGcGGAUAGGCuuGGCUGGAUCG-Cu -3'
miRNA:   3'- cUUGGC-CCUGUCUG--CUGAUUUAGCuG- -5'
22600 3' -49.9 NC_005091.1 + 17865 0.66 0.955542
Target:  5'- cGGCCGGGACcuguGCGA---GAUCGGCc -3'
miRNA:   3'- cUUGGCCCUGuc--UGCUgauUUAGCUG- -5'
22600 3' -49.9 NC_005091.1 + 36651 0.66 0.951129
Target:  5'- ---aCGGGACGGGCugGACU---UCGGCc -3'
miRNA:   3'- cuugGCCCUGUCUG--CUGAuuuAGCUG- -5'
22600 3' -49.9 NC_005091.1 + 19999 0.66 0.951129
Target:  5'- -uGCCGuGGGCGG-CGAUUGGuUCGAg -3'
miRNA:   3'- cuUGGC-CCUGUCuGCUGAUUuAGCUg -5'
22600 3' -49.9 NC_005091.1 + 30212 0.66 0.951129
Target:  5'- cGGCCGGGGCGucuuCGACc---UCGACa -3'
miRNA:   3'- cUUGGCCCUGUcu--GCUGauuuAGCUG- -5'
22600 3' -49.9 NC_005091.1 + 54729 0.66 0.951129
Target:  5'- gGGGCCGGGccaaagcggcACGGcAUGACUGAGauucuaggCGACa -3'
miRNA:   3'- -CUUGGCCC----------UGUC-UGCUGAUUUa-------GCUG- -5'
22600 3' -49.9 NC_005091.1 + 5618 0.66 0.946433
Target:  5'- -cGCCGGGAU-GAucCGGCgcaauGUCGACa -3'
miRNA:   3'- cuUGGCCCUGuCU--GCUGauu--UAGCUG- -5'
22600 3' -49.9 NC_005091.1 + 43993 0.66 0.946433
Target:  5'- uGAGCUGGGAgaagUAGACGcGCUuc-UCGAUa -3'
miRNA:   3'- -CUUGGCCCU----GUCUGC-UGAuuuAGCUG- -5'
22600 3' -49.9 NC_005091.1 + 39118 0.66 0.946433
Target:  5'- cAACCGGGaACAGcuugaAUGGCUc-AUCGACc -3'
miRNA:   3'- cUUGGCCC-UGUC-----UGCUGAuuUAGCUG- -5'
22600 3' -49.9 NC_005091.1 + 14534 0.66 0.941449
Target:  5'- -uGCCGGGGC-GACGGCUGcuugcaacUgGACg -3'
miRNA:   3'- cuUGGCCCUGuCUGCUGAUuu------AgCUG- -5'
22600 3' -49.9 NC_005091.1 + 27894 0.67 0.936173
Target:  5'- aGGACuCGGcGACGGagcGCGugUAccUCGACg -3'
miRNA:   3'- -CUUG-GCC-CUGUC---UGCugAUuuAGCUG- -5'
22600 3' -49.9 NC_005091.1 + 33259 0.67 0.930605
Target:  5'- uGAACCGGGugAuugcGAUGugUGcGUCG-Cg -3'
miRNA:   3'- -CUUGGCCCugU----CUGCugAUuUAGCuG- -5'
22600 3' -49.9 NC_005091.1 + 19912 0.67 0.930605
Target:  5'- cGAGCCGGGAUcGugGGaucAGUaCGGCa -3'
miRNA:   3'- -CUUGGCCCUGuCugCUgauUUA-GCUG- -5'
22600 3' -49.9 NC_005091.1 + 1850 0.67 0.924743
Target:  5'- aGACCGGGGaguucaaGGGCGACc---UCGGCc -3'
miRNA:   3'- cUUGGCCCUg------UCUGCUGauuuAGCUG- -5'
22600 3' -49.9 NC_005091.1 + 9042 0.68 0.905395
Target:  5'- cGACCGGGGCgaugaggucacGGugGACacgaaguucGAUCGACc -3'
miRNA:   3'- cUUGGCCCUG-----------UCugCUGau-------UUAGCUG- -5'
22600 3' -49.9 NC_005091.1 + 9680 0.68 0.905395
Target:  5'- cGGCUGGGcCAG-CGACUc-AUCGACc -3'
miRNA:   3'- cUUGGCCCuGUCuGCUGAuuUAGCUG- -5'
22600 3' -49.9 NC_005091.1 + 44032 0.68 0.898365
Target:  5'- -cGCCGGGAa--GCGACUGcgcccauUCGACa -3'
miRNA:   3'- cuUGGCCCUgucUGCUGAUuu-----AGCUG- -5'
22600 3' -49.9 NC_005091.1 + 27378 0.68 0.89105
Target:  5'- aGAACCGGuuGACGGAUGGCgaaccGUCG-Cg -3'
miRNA:   3'- -CUUGGCC--CUGUCUGCUGauu--UAGCuG- -5'
22600 3' -49.9 NC_005091.1 + 32579 0.68 0.883455
Target:  5'- -uACCGGG-CAGACGaugcGCUGAAccUCGGg -3'
miRNA:   3'- cuUGGCCCuGUCUGC----UGAUUU--AGCUg -5'
22600 3' -49.9 NC_005091.1 + 26729 0.68 0.883455
Target:  5'- -cGCCGGG-CcGcCGACUcGAUCGACc -3'
miRNA:   3'- cuUGGCCCuGuCuGCUGAuUUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.