miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22600 5' -57.5 NC_005091.1 + 19529 0.66 0.668857
Target:  5'- cGCGGgGUC-CGGUUGcugcgcuuucgGGcCGAGCgCCg -3'
miRNA:   3'- -CGCCgCAGaGCCAGCa----------CCaGUUCG-GG- -5'
22600 5' -57.5 NC_005091.1 + 14788 0.66 0.647601
Target:  5'- aGCGGCcUCUCGGauguuagCGUuccugucagugcGGUUGucGGCCCg -3'
miRNA:   3'- -CGCCGcAGAGCCa------GCA------------CCAGU--UCGGG- -5'
22600 5' -57.5 NC_005091.1 + 12460 0.67 0.583799
Target:  5'- --cGCGUUaCGGUCGUugaucgcacGGUCGAGCUUg -3'
miRNA:   3'- cgcCGCAGaGCCAGCA---------CCAGUUCGGG- -5'
22600 5' -57.5 NC_005091.1 + 12067 0.68 0.531578
Target:  5'- uCGGgGUCUcCGGUCGaGGUugcguacgcgCGAGCCg -3'
miRNA:   3'- cGCCgCAGA-GCCAGCaCCA----------GUUCGGg -5'
22600 5' -57.5 NC_005091.1 + 2302 0.68 0.531578
Target:  5'- uUGGCGUCUUccacGUCGaGcGUCAGGCCg -3'
miRNA:   3'- cGCCGCAGAGc---CAGCaC-CAGUUCGGg -5'
22600 5' -57.5 NC_005091.1 + 9776 0.68 0.521324
Target:  5'- gGCGGCugaaggCcCGGUCGaUGaGUCGcuGGCCCa -3'
miRNA:   3'- -CGCCGca----GaGCCAGC-AC-CAGU--UCGGG- -5'
22600 5' -57.5 NC_005091.1 + 48146 0.68 0.511148
Target:  5'- cCGGgGuUCUaaUGGUCGUGGUCcgaaucgaAGGUCCg -3'
miRNA:   3'- cGCCgC-AGA--GCCAGCACCAG--------UUCGGG- -5'
22600 5' -57.5 NC_005091.1 + 35065 0.68 0.511148
Target:  5'- uGCGGCGg--CGGUCGU--UCcaauGGCCCc -3'
miRNA:   3'- -CGCCGCagaGCCAGCAccAGu---UCGGG- -5'
22600 5' -57.5 NC_005091.1 + 6614 0.69 0.491051
Target:  5'- cGCGGCGUC-CGGgcugccggCGU--UCAuGCCCg -3'
miRNA:   3'- -CGCCGCAGaGCCa-------GCAccAGUuCGGG- -5'
22600 5' -57.5 NC_005091.1 + 6129 0.69 0.452016
Target:  5'- cUGGCGUCUCcGUCGUccUCGAacGCCCg -3'
miRNA:   3'- cGCCGCAGAGcCAGCAccAGUU--CGGG- -5'
22600 5' -57.5 NC_005091.1 + 19388 0.74 0.222941
Target:  5'- cGCGGCG-CUCGGgaGUGGuUCAAGUCg -3'
miRNA:   3'- -CGCCGCaGAGCCagCACC-AGUUCGGg -5'
22600 5' -57.5 NC_005091.1 + 29499 1.14 0.000362
Target:  5'- gGCGGCGUCUCGGUCGUGGUCAAGCCCg -3'
miRNA:   3'- -CGCCGCAGAGCCAGCACCAGUUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.