miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22601 5' -49.4 NC_005091.1 + 3375 0.65 0.970843
Target:  5'- aGCUUcUCgCCGAguUcUUCGCAcugaaggccgguguGCAAGCCg -3'
miRNA:   3'- -CGGA-AG-GGCUguA-AAGCGU--------------UGUUCGG- -5'
22601 5' -49.4 NC_005091.1 + 37285 0.66 0.968547
Target:  5'- cGCCggaacgCCUGACcgUaUCGCA---GGCCg -3'
miRNA:   3'- -CGGaa----GGGCUGuaA-AGCGUuguUCGG- -5'
22601 5' -49.4 NC_005091.1 + 50071 0.66 0.965049
Target:  5'- uUCUUCCa-GCucg-CGCAACGAGUCg -3'
miRNA:   3'- cGGAAGGgcUGuaaaGCGUUGUUCGG- -5'
22601 5' -49.4 NC_005091.1 + 18209 0.66 0.965049
Target:  5'- gGCCga-CCGACGUguucUCGauCAGCGuGCCg -3'
miRNA:   3'- -CGGaagGGCUGUAa---AGC--GUUGUuCGG- -5'
22601 5' -49.4 NC_005091.1 + 11726 0.66 0.965049
Target:  5'- -aCUUCCUGACGgcaUGCGAuCGGGUCu -3'
miRNA:   3'- cgGAAGGGCUGUaaaGCGUU-GUUCGG- -5'
22601 5' -49.4 NC_005091.1 + 19569 0.66 0.964685
Target:  5'- -aCUUCCCGcaggccacggaggGCA---CGCcGCAGGCCg -3'
miRNA:   3'- cgGAAGGGC-------------UGUaaaGCGuUGUUCGG- -5'
22601 5' -49.4 NC_005091.1 + 44011 0.66 0.961286
Target:  5'- cGCgCUUCUCGAUAUgcaggUCGcCGGgAAGCg -3'
miRNA:   3'- -CG-GAAGGGCUGUAa----AGC-GUUgUUCGg -5'
22601 5' -49.4 NC_005091.1 + 35010 0.66 0.961286
Target:  5'- gGCCgcagUCaCCG-CAUUgCGCuuCGAGCUg -3'
miRNA:   3'- -CGGa---AG-GGCuGUAAaGCGuuGUUCGG- -5'
22601 5' -49.4 NC_005091.1 + 16068 0.66 0.961286
Target:  5'- aUCUUCCCGGagauacUUCGUAguGCcGGCCg -3'
miRNA:   3'- cGGAAGGGCUgua---AAGCGU--UGuUCGG- -5'
22601 5' -49.4 NC_005091.1 + 16241 0.66 0.960501
Target:  5'- gGCCg--CCGGCAUgcgaugcgccgcUCGCGACGAacgcGCCg -3'
miRNA:   3'- -CGGaagGGCUGUAa-----------AGCGUUGUU----CGG- -5'
22601 5' -49.4 NC_005091.1 + 4382 0.66 0.958899
Target:  5'- aCCUUCCCGAugcacgacgaagaaaCGg--CGCAguucAUggGCCg -3'
miRNA:   3'- cGGAAGGGCU---------------GUaaaGCGU----UGuuCGG- -5'
22601 5' -49.4 NC_005091.1 + 41303 0.66 0.957252
Target:  5'- gGCCUUgaaaaCCCGaACAgucCGCAGCA-GCUc -3'
miRNA:   3'- -CGGAA-----GGGC-UGUaaaGCGUUGUuCGG- -5'
22601 5' -49.4 NC_005091.1 + 52416 0.66 0.956834
Target:  5'- uGCUcgCCCGucgccucaacgucGCAUgcgaCGCAGCAcuGGCCg -3'
miRNA:   3'- -CGGaaGGGC-------------UGUAaa--GCGUUGU--UCGG- -5'
22601 5' -49.4 NC_005091.1 + 51795 0.66 0.955988
Target:  5'- aUCUUCCCGGCGUccgggcgugcggcuUgcgCGCGAUuguguacGGCCa -3'
miRNA:   3'- cGGAAGGGCUGUA--------------Aa--GCGUUGu------UCGG- -5'
22601 5' -49.4 NC_005091.1 + 39179 0.66 0.955561
Target:  5'- cGCCUcguguugugaaggCCCGAUAg-UCGgAGCGAGCg -3'
miRNA:   3'- -CGGAa------------GGGCUGUaaAGCgUUGUUCGg -5'
22601 5' -49.4 NC_005091.1 + 44575 0.67 0.95294
Target:  5'- cGCCUUCUCGGCcgcgUCGUAcguGGCg -3'
miRNA:   3'- -CGGAAGGGCUGuaa-AGCGUuguUCGg -5'
22601 5' -49.4 NC_005091.1 + 48748 0.67 0.95294
Target:  5'- uGCgUUgCgGGCAcgccacaCGCGGCAGGCCg -3'
miRNA:   3'- -CGgAAgGgCUGUaaa----GCGUUGUUCGG- -5'
22601 5' -49.4 NC_005091.1 + 52842 0.67 0.948344
Target:  5'- cGCCaUCguucggcgcuCCGACGauuugUUUGCAGCcGGCCg -3'
miRNA:   3'- -CGGaAG----------GGCUGUa----AAGCGUUGuUCGG- -5'
22601 5' -49.4 NC_005091.1 + 46520 0.67 0.948344
Target:  5'- cGCCUUCuuGA----UCGCcuuGCAuGCCg -3'
miRNA:   3'- -CGGAAGggCUguaaAGCGu--UGUuCGG- -5'
22601 5' -49.4 NC_005091.1 + 10874 0.67 0.948344
Target:  5'- cGCCUuggCCgCGAUcgUUCGCGcACucugcuGCCg -3'
miRNA:   3'- -CGGAa--GG-GCUGuaAAGCGU-UGuu----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.