miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22601 5' -49.4 NC_005091.1 + 46520 0.67 0.948344
Target:  5'- cGCCUUCuuGA----UCGCcuuGCAuGCCg -3'
miRNA:   3'- -CGGAAGggCUguaaAGCGu--UGUuCGG- -5'
22601 5' -49.4 NC_005091.1 + 11100 0.67 0.947869
Target:  5'- aGCCg-CCCGGCAaa--GCGACcccggcgAAGCCg -3'
miRNA:   3'- -CGGaaGGGCUGUaaagCGUUG-------UUCGG- -5'
22601 5' -49.4 NC_005091.1 + 33634 0.67 0.943461
Target:  5'- cGUCUggCCCGGCGgcaUCGgGACuucaccAGCCg -3'
miRNA:   3'- -CGGAa-GGGCUGUaa-AGCgUUGu-----UCGG- -5'
22601 5' -49.4 NC_005091.1 + 16182 0.67 0.943461
Target:  5'- gGCCUcgucCCCGAUccgggUGCAAC-GGCCg -3'
miRNA:   3'- -CGGAa---GGGCUGuaaa-GCGUUGuUCGG- -5'
22601 5' -49.4 NC_005091.1 + 25605 0.67 0.938286
Target:  5'- -gCUUCUCGGCuucgCGCAACA-GCUc -3'
miRNA:   3'- cgGAAGGGCUGuaaaGCGUUGUuCGG- -5'
22601 5' -49.4 NC_005091.1 + 49138 0.67 0.938286
Target:  5'- cGCCccgCCCGcACAcggugCGCAGCAGcgcGCCc -3'
miRNA:   3'- -CGGaa-GGGC-UGUaaa--GCGUUGUU---CGG- -5'
22601 5' -49.4 NC_005091.1 + 23028 0.67 0.938286
Target:  5'- cGCCUgccgCCGACGccaUCGCAuCGGGCa -3'
miRNA:   3'- -CGGAag--GGCUGUaa-AGCGUuGUUCGg -5'
22601 5' -49.4 NC_005091.1 + 15571 0.67 0.932817
Target:  5'- cGCaa--CgGAC--UUCGCAGCGGGCCa -3'
miRNA:   3'- -CGgaagGgCUGuaAAGCGUUGUUCGG- -5'
22601 5' -49.4 NC_005091.1 + 2217 0.67 0.932817
Target:  5'- gGCCUgacgCUCGACGUggaagaCGC--CAAGCCc -3'
miRNA:   3'- -CGGAa---GGGCUGUAaa----GCGuuGUUCGG- -5'
22601 5' -49.4 NC_005091.1 + 23826 0.67 0.932817
Target:  5'- cGCCUcuUCCUG-CGUaaUCGCGcCGAGCUg -3'
miRNA:   3'- -CGGA--AGGGCuGUAa-AGCGUuGUUCGG- -5'
22601 5' -49.4 NC_005091.1 + 31131 0.67 0.932817
Target:  5'- aGCgUUCCCGAUgcaaCGCGugGacuucGGCCg -3'
miRNA:   3'- -CGgAAGGGCUGuaaaGCGUugU-----UCGG- -5'
22601 5' -49.4 NC_005091.1 + 1291 0.68 0.927052
Target:  5'- uUCUUCgCGACG---UGCGGCAAGCa -3'
miRNA:   3'- cGGAAGgGCUGUaaaGCGUUGUUCGg -5'
22601 5' -49.4 NC_005091.1 + 44589 0.68 0.927052
Target:  5'- gGCCUguaauaucgUCUCGACGUgcaGCGAagAAGCCc -3'
miRNA:   3'- -CGGA---------AGGGCUGUAaagCGUUg-UUCGG- -5'
22601 5' -49.4 NC_005091.1 + 54286 0.68 0.927052
Target:  5'- gGUCUUCCUGAUGgc-CGCAgu-AGCCg -3'
miRNA:   3'- -CGGAAGGGCUGUaaaGCGUuguUCGG- -5'
22601 5' -49.4 NC_005091.1 + 2300 0.68 0.920991
Target:  5'- aGCCa---CGACGcaUCGCGACGAcGCCg -3'
miRNA:   3'- -CGGaaggGCUGUaaAGCGUUGUU-CGG- -5'
22601 5' -49.4 NC_005091.1 + 43146 0.68 0.914635
Target:  5'- cGCUUUCUUucGCAUgccacUCGCGACGAGCa -3'
miRNA:   3'- -CGGAAGGGc-UGUAa----AGCGUUGUUCGg -5'
22601 5' -49.4 NC_005091.1 + 6093 0.68 0.914635
Target:  5'- cGCCgcUUCGGCucgUCGCccGCAAGCCc -3'
miRNA:   3'- -CGGaaGGGCUGuaaAGCGu-UGUUCGG- -5'
22601 5' -49.4 NC_005091.1 + 45687 0.68 0.907985
Target:  5'- aUCgacgCCCGGCGUguucUUCGuCAGgAAGCCg -3'
miRNA:   3'- cGGaa--GGGCUGUA----AAGC-GUUgUUCGG- -5'
22601 5' -49.4 NC_005091.1 + 25018 0.68 0.907985
Target:  5'- uGCCaUCCCGugAa--CGCAGC-GGUCa -3'
miRNA:   3'- -CGGaAGGGCugUaaaGCGUUGuUCGG- -5'
22601 5' -49.4 NC_005091.1 + 14606 0.68 0.907985
Target:  5'- aGCCgucgcCCCGGCAUcgaGCGGCAcGCUu -3'
miRNA:   3'- -CGGaa---GGGCUGUAaagCGUUGUuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.