miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22603 5' -54.6 NC_005091.1 + 46710 0.66 0.778282
Target:  5'- uUCCUGCucACGCCACaGgacgUGUUGgaAGGcCg -3'
miRNA:   3'- -AGGACGu-UGCGGUG-Ca---ACAGC--UCCaG- -5'
22603 5' -54.6 NC_005091.1 + 18223 0.66 0.757949
Target:  5'- ---cGCAuCGCCACGcgcaucgCGAGGUCg -3'
miRNA:   3'- aggaCGUuGCGGUGCaaca---GCUCCAG- -5'
22603 5' -54.6 NC_005091.1 + 14552 0.66 0.737099
Target:  5'- cCCUGuCAcgauCGCUACGg---CGGGGUCg -3'
miRNA:   3'- aGGAC-GUu---GCGGUGCaacaGCUCCAG- -5'
22603 5' -54.6 NC_005091.1 + 34367 0.67 0.703975
Target:  5'- -aCUGC-ACGCCGCGUcgaagcgugggcgUGUCGAGu-- -3'
miRNA:   3'- agGACGuUGCGGUGCA-------------ACAGCUCcag -5'
22603 5' -54.6 NC_005091.1 + 20116 0.67 0.683316
Target:  5'- aCCgUGCccauccACGCCACGUccgcuucguUGUCcGGGUCg -3'
miRNA:   3'- aGG-ACGu-----UGCGGUGCA---------ACAGcUCCAG- -5'
22603 5' -54.6 NC_005091.1 + 40880 0.68 0.617259
Target:  5'- aCCgUGCAgaGCGCCcaguCGUUGUCGccGUCc -3'
miRNA:   3'- aGG-ACGU--UGCGGu---GCAACAGCucCAG- -5'
22603 5' -54.6 NC_005091.1 + 57343 0.69 0.551641
Target:  5'- cUCCUGcCGACGCCGgGUUG-CGGGa-- -3'
miRNA:   3'- -AGGAC-GUUGCGGUgCAACaGCUCcag -5'
22603 5' -54.6 NC_005091.1 + 55975 0.7 0.540882
Target:  5'- gCCUGCuGCGCCAuCGUgcgaccggGaUCGAuGGUCa -3'
miRNA:   3'- aGGACGuUGCGGU-GCAa-------C-AGCU-CCAG- -5'
22603 5' -54.6 NC_005091.1 + 30311 1.11 0.00091
Target:  5'- uUCCUGCAACGCCACGUUGUCGAGGUCg -3'
miRNA:   3'- -AGGACGUUGCGGUGCAACAGCUCCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.