miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22604 5' -55 NC_005091.1 + 51803 0.65 0.781518
Target:  5'- gGCGUCCgGGCgugCGGCuUGCgCGCGAUUg -3'
miRNA:   3'- -UGCAGG-CUGaa-GUUG-GCGaGCGCUGA- -5'
22604 5' -55 NC_005091.1 + 8069 0.66 0.761482
Target:  5'- cACGUUCGuACggCAcgagcCCGCUUGCGAUg -3'
miRNA:   3'- -UGCAGGC-UGaaGUu----GGCGAGCGCUGa -5'
22604 5' -55 NC_005091.1 + 33632 0.66 0.761482
Target:  5'- cGCGUCUGGCc-CGGCgGCaUCGgGACUu -3'
miRNA:   3'- -UGCAGGCUGaaGUUGgCG-AGCgCUGA- -5'
22604 5' -55 NC_005091.1 + 21180 0.66 0.760465
Target:  5'- uCGUCUGcGCUugaacgcUCGACgCGCUCGUGAUc -3'
miRNA:   3'- uGCAGGC-UGA-------AGUUG-GCGAGCGCUGa -5'
22604 5' -55 NC_005091.1 + 13736 0.66 0.740922
Target:  5'- aGCGUCCGugUcgauaucccgUCGAUCGCcgguaagcaacUCGgGACg -3'
miRNA:   3'- -UGCAGGCugA----------AGUUGGCG-----------AGCgCUGa -5'
22604 5' -55 NC_005091.1 + 42666 0.66 0.730474
Target:  5'- aGCGUCCGAg--CGugCGCggCGCgGACa -3'
miRNA:   3'- -UGCAGGCUgaaGUugGCGa-GCG-CUGa -5'
22604 5' -55 NC_005091.1 + 1835 0.66 0.730474
Target:  5'- uCGUauUCGAUgaggUCGACCG-UCGCGACg -3'
miRNA:   3'- uGCA--GGCUGa---AGUUGGCgAGCGCUGa -5'
22604 5' -55 NC_005091.1 + 54225 0.66 0.730474
Target:  5'- uCGUCCGGCUUCAaauACUGCgaucCGUaGCa -3'
miRNA:   3'- uGCAGGCUGAAGU---UGGCGa---GCGcUGa -5'
22604 5' -55 NC_005091.1 + 15945 0.67 0.698593
Target:  5'- uCGUCC-ACUU--GgCGCUCGCGGCg -3'
miRNA:   3'- uGCAGGcUGAAguUgGCGAGCGCUGa -5'
22604 5' -55 NC_005091.1 + 11669 0.67 0.687825
Target:  5'- uCG-CCGGcCUUCAGCgGCUCGaUGGCg -3'
miRNA:   3'- uGCaGGCU-GAAGUUGgCGAGC-GCUGa -5'
22604 5' -55 NC_005091.1 + 18205 0.67 0.673748
Target:  5'- cCGUUCGACUUCAggucgcgcaucgccACgCGCaUCGCGAg- -3'
miRNA:   3'- uGCAGGCUGAAGU--------------UG-GCG-AGCGCUga -5'
22604 5' -55 NC_005091.1 + 52660 0.68 0.655245
Target:  5'- uCGUCCGGCUguUCGuuACCGCgugcgUCGCGcCg -3'
miRNA:   3'- uGCAGGCUGA--AGU--UGGCG-----AGCGCuGa -5'
22604 5' -55 NC_005091.1 + 6962 0.68 0.655245
Target:  5'- cGCGcCCG-CUUCcGCUGCgcgUGCGACg -3'
miRNA:   3'- -UGCaGGCuGAAGuUGGCGa--GCGCUGa -5'
22604 5' -55 NC_005091.1 + 11396 0.68 0.643237
Target:  5'- cGCGUCaCGcugcGCUUCGGCCuGCcccuguuUCGCGGCg -3'
miRNA:   3'- -UGCAG-GC----UGAAGUUGG-CG-------AGCGCUGa -5'
22604 5' -55 NC_005091.1 + 7359 0.68 0.633402
Target:  5'- uCGUCCGAUUcgccaAACUGCUCGUGGa- -3'
miRNA:   3'- uGCAGGCUGAag---UUGGCGAGCGCUga -5'
22604 5' -55 NC_005091.1 + 31206 0.68 0.622474
Target:  5'- cCG-CCGAUgaUCGGCUGCUCGcCGGCa -3'
miRNA:   3'- uGCaGGCUGa-AGUUGGCGAGC-GCUGa -5'
22604 5' -55 NC_005091.1 + 5515 0.68 0.622474
Target:  5'- cAUGUCCGuaagCAACCGgUCGCG-CUg -3'
miRNA:   3'- -UGCAGGCugaaGUUGGCgAGCGCuGA- -5'
22604 5' -55 NC_005091.1 + 26722 0.68 0.622474
Target:  5'- cCG-CCGACUcgaUCGACCGCcCGUGAa- -3'
miRNA:   3'- uGCaGGCUGA---AGUUGGCGaGCGCUga -5'
22604 5' -55 NC_005091.1 + 57192 0.68 0.622474
Target:  5'- gGCGUUCGAUauaCAGCCGCUCGgCcGCa -3'
miRNA:   3'- -UGCAGGCUGaa-GUUGGCGAGC-GcUGa -5'
22604 5' -55 NC_005091.1 + 41748 0.69 0.568139
Target:  5'- gACGUUCGGguCUUCGAgCGCcUCGCGAa- -3'
miRNA:   3'- -UGCAGGCU--GAAGUUgGCG-AGCGCUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.