miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22605 5' -57.4 NC_005091.1 + 47447 0.66 0.60574
Target:  5'- aGUAGCgcgugUCGuuccgcACgAGCGgCAGCGCGUCu -3'
miRNA:   3'- gCGUCG-----AGCu-----UG-UCGCgGUCGCGUAG- -5'
22605 5' -57.4 NC_005091.1 + 52116 0.66 0.594828
Target:  5'- gGCGGC-CGucgcCGGCGCgGgGCGCGUUg -3'
miRNA:   3'- gCGUCGaGCuu--GUCGCGgU-CGCGUAG- -5'
22605 5' -57.4 NC_005091.1 + 53041 0.66 0.594828
Target:  5'- uCGCGGCgagcauggCGAACGGCuGCUcGCGUucguUCg -3'
miRNA:   3'- -GCGUCGa-------GCUUGUCG-CGGuCGCGu---AG- -5'
22605 5' -57.4 NC_005091.1 + 57107 0.66 0.594828
Target:  5'- uGCGGC-CGAGCGGCuguauaucgaacGCCAGCuuccGCGacUCg -3'
miRNA:   3'- gCGUCGaGCUUGUCG------------CGGUCG----CGU--AG- -5'
22605 5' -57.4 NC_005091.1 + 53169 0.66 0.594828
Target:  5'- uGUAGCgcgCGGGCgcgAGCcuuCCGGUGCAUCc -3'
miRNA:   3'- gCGUCGa--GCUUG---UCGc--GGUCGCGUAG- -5'
22605 5' -57.4 NC_005091.1 + 36482 0.66 0.583947
Target:  5'- gGCGGC-CGGAUcgaAGCGgaUCAGCGCAa- -3'
miRNA:   3'- gCGUCGaGCUUG---UCGC--GGUCGCGUag -5'
22605 5' -57.4 NC_005091.1 + 13819 0.66 0.583947
Target:  5'- -uCGGCUCGGGCGGUucGCCuGCGUcuuccgugGUCa -3'
miRNA:   3'- gcGUCGAGCUUGUCG--CGGuCGCG--------UAG- -5'
22605 5' -57.4 NC_005091.1 + 15801 0.66 0.573105
Target:  5'- gCGCGGC-CGAACAguugauGCGCCAGUa---- -3'
miRNA:   3'- -GCGUCGaGCUUGU------CGCGGUCGcguag -5'
22605 5' -57.4 NC_005091.1 + 21235 0.66 0.562312
Target:  5'- gGCGGUUgCGAGCAGUGUUucugacGCGCuAUCg -3'
miRNA:   3'- gCGUCGA-GCUUGUCGCGGu-----CGCG-UAG- -5'
22605 5' -57.4 NC_005091.1 + 52246 0.66 0.562312
Target:  5'- aGCGGCUUGAACcuuUGCgAGCGUgAUCa -3'
miRNA:   3'- gCGUCGAGCUUGuc-GCGgUCGCG-UAG- -5'
22605 5' -57.4 NC_005091.1 + 33261 0.66 0.562312
Target:  5'- aGCAGCUC--GCGGCGgCCGauaacGCGC-UCg -3'
miRNA:   3'- gCGUCGAGcuUGUCGC-GGU-----CGCGuAG- -5'
22605 5' -57.4 NC_005091.1 + 34372 0.66 0.562312
Target:  5'- aCGCcGCgUCGA--AGCGUgGGCGUGUCg -3'
miRNA:   3'- -GCGuCG-AGCUugUCGCGgUCGCGUAG- -5'
22605 5' -57.4 NC_005091.1 + 23544 0.66 0.551575
Target:  5'- gCGCAGUUCcu---GCGCCAGauggcgaGCGUCa -3'
miRNA:   3'- -GCGUCGAGcuuguCGCGGUCg------CGUAG- -5'
22605 5' -57.4 NC_005091.1 + 36714 0.66 0.551575
Target:  5'- aCGCgAGgUCGAACGGCucGCCGuCGcCAUCa -3'
miRNA:   3'- -GCG-UCgAGCUUGUCG--CGGUcGC-GUAG- -5'
22605 5' -57.4 NC_005091.1 + 19222 0.66 0.551575
Target:  5'- ---cGUUCGAGCAGCGCgCAagugaugugcuGCGUGUCg -3'
miRNA:   3'- gcguCGAGCUUGUCGCG-GU-----------CGCGUAG- -5'
22605 5' -57.4 NC_005091.1 + 10223 0.66 0.551575
Target:  5'- uGCGgcGCUCG-GCGcGUGCCGGCGUAa- -3'
miRNA:   3'- gCGU--CGAGCuUGU-CGCGGUCGCGUag -5'
22605 5' -57.4 NC_005091.1 + 39345 0.66 0.550504
Target:  5'- aCGCAGCggcgCGAucacgagACAGUGCUuguaugcgaAGCGCGa- -3'
miRNA:   3'- -GCGUCGa---GCU-------UGUCGCGG---------UCGCGUag -5'
22605 5' -57.4 NC_005091.1 + 57659 0.67 0.545162
Target:  5'- aGCGGCUaCGAaucgguauuuggcgcGCAGaacaaGCCGG-GCAUCg -3'
miRNA:   3'- gCGUCGA-GCU---------------UGUCg----CGGUCgCGUAG- -5'
22605 5' -57.4 NC_005091.1 + 265 0.67 0.545162
Target:  5'- aGCGGCUaCGAaucgguauuuggcgcGCAGaacaaGCCGG-GCAUCg -3'
miRNA:   3'- gCGUCGA-GCU---------------UGUCg----CGGUCgCGUAG- -5'
22605 5' -57.4 NC_005091.1 + 54944 0.67 0.5409
Target:  5'- aCGC-GCUCGccaAGCGCC-GCGCGg- -3'
miRNA:   3'- -GCGuCGAGCuugUCGCGGuCGCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.