miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22605 5' -57.4 NC_005091.1 + 31222 1.1 0.000484
Target:  5'- uCGCAGCUCGAACAGCGCCAGCGCAUCg -3'
miRNA:   3'- -GCGUCGAGCUUGUCGCGGUCGCGUAG- -5'
22605 5' -57.4 NC_005091.1 + 23394 0.82 0.055584
Target:  5'- aCGCAGCgccgccgaacagacCGAGCAGCGCCAucgccgcGCGCGUCg -3'
miRNA:   3'- -GCGUCGa-------------GCUUGUCGCGGU-------CGCGUAG- -5'
22605 5' -57.4 NC_005091.1 + 55023 0.77 0.11894
Target:  5'- gCGCGGCgcuuggCGAGCGcguuGCGgCGGCGCAUCa -3'
miRNA:   3'- -GCGUCGa-----GCUUGU----CGCgGUCGCGUAG- -5'
22605 5' -57.4 NC_005091.1 + 3022 0.76 0.136668
Target:  5'- uCGUAcGUgCGGGCAGCGcCCAGCGCAUUg -3'
miRNA:   3'- -GCGU-CGaGCUUGUCGC-GGUCGCGUAG- -5'
22605 5' -57.4 NC_005091.1 + 28365 0.75 0.174314
Target:  5'- gGCAGCaaggCGAaggucacGCAaGcCGCCAGCGCGUCg -3'
miRNA:   3'- gCGUCGa---GCU-------UGU-C-GCGGUCGCGUAG- -5'
22605 5' -57.4 NC_005091.1 + 7060 0.74 0.194593
Target:  5'- aGCAGCUCGAugAcGCGCgGGUcgGCGUUg -3'
miRNA:   3'- gCGUCGAGCUugU-CGCGgUCG--CGUAG- -5'
22605 5' -57.4 NC_005091.1 + 5450 0.73 0.233983
Target:  5'- aCGCgAGCgCGGACAGCGCCAuGUGUuUCc -3'
miRNA:   3'- -GCG-UCGaGCUUGUCGCGGU-CGCGuAG- -5'
22605 5' -57.4 NC_005091.1 + 31789 0.72 0.266065
Target:  5'- gCGCAGC-CGAA-GGCgGCCGGCGCGg- -3'
miRNA:   3'- -GCGUCGaGCUUgUCG-CGGUCGCGUag -5'
22605 5' -57.4 NC_005091.1 + 41786 0.72 0.272894
Target:  5'- gCGCAGUUCGAGC-GCGUgAuGaCGCGUCg -3'
miRNA:   3'- -GCGUCGAGCUUGuCGCGgU-C-GCGUAG- -5'
22605 5' -57.4 NC_005091.1 + 6688 0.71 0.31683
Target:  5'- gGCAGCcCGGACGccGCGCgAGCGauCAUCg -3'
miRNA:   3'- gCGUCGaGCUUGU--CGCGgUCGC--GUAG- -5'
22605 5' -57.4 NC_005091.1 + 25212 0.7 0.331812
Target:  5'- gGCGGCcgcugcaccggggUCGAu--GCaGCCGGCGCGUCg -3'
miRNA:   3'- gCGUCG-------------AGCUuguCG-CGGUCGCGUAG- -5'
22605 5' -57.4 NC_005091.1 + 46476 0.7 0.332614
Target:  5'- aCGUGGCuUCGAGCAGCaGCuuuugCAGCGCGa- -3'
miRNA:   3'- -GCGUCG-AGCUUGUCG-CG-----GUCGCGUag -5'
22605 5' -57.4 NC_005091.1 + 26645 0.7 0.348969
Target:  5'- gGCGGUcgaUCGAGuCGGCgGCCcggcguugAGCGCAUCa -3'
miRNA:   3'- gCGUCG---AGCUU-GUCG-CGG--------UCGCGUAG- -5'
22605 5' -57.4 NC_005091.1 + 52793 0.7 0.365028
Target:  5'- aCGCGGCggCGAucaggccGCAcGCGgCAGCaGCAUCa -3'
miRNA:   3'- -GCGUCGa-GCU-------UGU-CGCgGUCG-CGUAG- -5'
22605 5' -57.4 NC_005091.1 + 34075 0.69 0.383365
Target:  5'- gGCAGCUCGGACucgauAGCGgCC-GCGUAc- -3'
miRNA:   3'- gCGUCGAGCUUG-----UCGC-GGuCGCGUag -5'
22605 5' -57.4 NC_005091.1 + 14308 0.69 0.383365
Target:  5'- gGCGGCUCG-ACcGUGCCcgucacgauGCGUAUCg -3'
miRNA:   3'- gCGUCGAGCuUGuCGCGGu--------CGCGUAG- -5'
22605 5' -57.4 NC_005091.1 + 439 0.69 0.392308
Target:  5'- gCGCAGgUCGAGCAGCaaUCGGCG-GUCg -3'
miRNA:   3'- -GCGUCgAGCUUGUCGc-GGUCGCgUAG- -5'
22605 5' -57.4 NC_005091.1 + 57833 0.69 0.392308
Target:  5'- gCGCAGgUCGAGCAGCaaUCGGCG-GUCg -3'
miRNA:   3'- -GCGUCgAGCUUGUCGc-GGUCGCgUAG- -5'
22605 5' -57.4 NC_005091.1 + 25104 0.69 0.392308
Target:  5'- gGCGGUcgccaUCGAc--GCGCCGGCuGCAUCg -3'
miRNA:   3'- gCGUCG-----AGCUuguCGCGGUCG-CGUAG- -5'
22605 5' -57.4 NC_005091.1 + 50832 0.69 0.392308
Target:  5'- uGCGGCUCGAuaucaAGCGUgCGGC-CGUCg -3'
miRNA:   3'- gCGUCGAGCUug---UCGCG-GUCGcGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.