miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22606 3' -57 NC_005091.1 + 51517 0.66 0.671239
Target:  5'- aCCgGggCuGUCGaCGCUGcGCGUGCAGu -3'
miRNA:   3'- gGGgCaaG-CAGC-GCGGCuUGCACGUU- -5'
22606 3' -57 NC_005091.1 + 1015 0.66 0.66051
Target:  5'- uUCCGggUCGUaCGCGaCGAacaugGCGUGCGAg -3'
miRNA:   3'- gGGGCa-AGCA-GCGCgGCU-----UGCACGUU- -5'
22606 3' -57 NC_005091.1 + 29266 0.66 0.66051
Target:  5'- gUUCGacagcUUCGUCGCGCCauccgucGCGUGCAGc -3'
miRNA:   3'- gGGGC-----AAGCAGCGCGGcu-----UGCACGUU- -5'
22606 3' -57 NC_005091.1 + 12970 0.66 0.66051
Target:  5'- gCCaCGgUCGUcCGgGCCGAGCG-GCGu -3'
miRNA:   3'- gGG-GCaAGCA-GCgCGGCUUGCaCGUu -5'
22606 3' -57 NC_005091.1 + 12006 0.66 0.649756
Target:  5'- uCCUCGUgaacUCGauccgaCGCGCagggGAACGUGCAGc -3'
miRNA:   3'- -GGGGCA----AGCa-----GCGCGg---CUUGCACGUU- -5'
22606 3' -57 NC_005091.1 + 6986 0.66 0.646526
Target:  5'- uUCCGccaugaucucuuucUUCGUCGCGCCcGcuuccgcugcGCGUGCGAc -3'
miRNA:   3'- gGGGC--------------AAGCAGCGCGGcU----------UGCACGUU- -5'
22606 3' -57 NC_005091.1 + 54098 0.67 0.585229
Target:  5'- gUCgCGUUCgGUCGCGCCGugcaauuGCGcuUGCAc -3'
miRNA:   3'- -GGgGCAAG-CAGCGCGGCu------UGC--ACGUu -5'
22606 3' -57 NC_005091.1 + 49820 0.68 0.553356
Target:  5'- gCCgCGUUCGUggcggcuugCGCGuuGAGCGcgGCAc -3'
miRNA:   3'- -GGgGCAAGCA---------GCGCggCUUGCa-CGUu -5'
22606 3' -57 NC_005091.1 + 50643 0.68 0.52202
Target:  5'- gCCgGUUCGUCGUuCCGcuCGUGCc- -3'
miRNA:   3'- gGGgCAAGCAGCGcGGCuuGCACGuu -5'
22606 3' -57 NC_005091.1 + 23818 0.68 0.515833
Target:  5'- uUCUgGUUCGccucuuccugcguaaUCGCGCCGAGC-UGCAc -3'
miRNA:   3'- -GGGgCAAGC---------------AGCGCGGCUUGcACGUu -5'
22606 3' -57 NC_005091.1 + 1393 0.68 0.511725
Target:  5'- cUCCUGU---UCGCGCCGAugGgcgGCAu -3'
miRNA:   3'- -GGGGCAagcAGCGCGGCUugCa--CGUu -5'
22606 3' -57 NC_005091.1 + 49547 0.68 0.501515
Target:  5'- gCCUGcUCGUCGCGCU---CGUGCGc -3'
miRNA:   3'- gGGGCaAGCAGCGCGGcuuGCACGUu -5'
22606 3' -57 NC_005091.1 + 23375 0.69 0.471447
Target:  5'- aCUCCGgugcagUCGUCGgucaGCCGGGCG-GCAu -3'
miRNA:   3'- -GGGGCa-----AGCAGCg---CGGCUUGCaCGUu -5'
22606 3' -57 NC_005091.1 + 25699 0.69 0.471447
Target:  5'- aUCUGUUCGaUCGCGagGAACGUGCc- -3'
miRNA:   3'- gGGGCAAGC-AGCGCggCUUGCACGuu -5'
22606 3' -57 NC_005091.1 + 46066 0.7 0.442321
Target:  5'- aCCCGUUCG-C-CGCCG-ACGUaGCGAa -3'
miRNA:   3'- gGGGCAAGCaGcGCGGCuUGCA-CGUU- -5'
22606 3' -57 NC_005091.1 + 18678 0.7 0.441367
Target:  5'- gCCCCauucgcgGUUCGUCGCGCauucauaGAugAUGUGCGc -3'
miRNA:   3'- -GGGG-------CAAGCAGCGCGg------CU--UGCACGUu -5'
22606 3' -57 NC_005091.1 + 25987 0.7 0.423478
Target:  5'- aCCCGaaagUCGUUGCGCagGAauaccaauACGUGCAGg -3'
miRNA:   3'- gGGGCa---AGCAGCGCGg-CU--------UGCACGUU- -5'
22606 3' -57 NC_005091.1 + 43187 0.72 0.321257
Target:  5'- gCCCCGcUCGUCGCgaaagcGCCGGGCaaGCGAc -3'
miRNA:   3'- -GGGGCaAGCAGCG------CGGCUUGcaCGUU- -5'
22606 3' -57 NC_005091.1 + 52643 0.75 0.199175
Target:  5'- aCCgCGUgCGUCGCGCCGAuccCGUGUg- -3'
miRNA:   3'- -GGgGCAaGCAGCGCGGCUu--GCACGuu -5'
22606 3' -57 NC_005091.1 + 31417 1.08 0.000984
Target:  5'- gCCCCGUUCGUCGCGCCGAACGUGCAAg -3'
miRNA:   3'- -GGGGCAAGCAGCGCGGCUUGCACGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.