miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22606 5' -52 NC_005091.1 + 35135 0.66 0.902889
Target:  5'- aGCaGCUUGUGG-UACGCGucgcggcgccgccGCGAGGu -3'
miRNA:   3'- gCGaCGAGCACCuAUGUGC-------------UGCUUCu -5'
22606 5' -52 NC_005091.1 + 31218 0.67 0.84916
Target:  5'- gGCUGCUCGccg--GCACGACGcuuGAg -3'
miRNA:   3'- gCGACGAGCaccuaUGUGCUGCuu-CU- -5'
22606 5' -52 NC_005091.1 + 40645 0.67 0.848293
Target:  5'- gGCcgUGCUCGgcgcgGGAUACcgacucgGCGGCGgcGAc -3'
miRNA:   3'- gCG--ACGAGCa----CCUAUG-------UGCUGCuuCU- -5'
22606 5' -52 NC_005091.1 + 721 0.68 0.812769
Target:  5'- gGCUGCUgCGUGaGGUcgaGCGCcaGugGAAGGa -3'
miRNA:   3'- gCGACGA-GCAC-CUA---UGUG--CugCUUCU- -5'
22606 5' -52 NC_005091.1 + 36006 0.68 0.803158
Target:  5'- uCGCaGCgCGUcGAU-CACGACGGAGAc -3'
miRNA:   3'- -GCGaCGaGCAcCUAuGUGCUGCUUCU- -5'
22606 5' -52 NC_005091.1 + 13784 0.68 0.803158
Target:  5'- aCGUUGaaaaacgucaCGUGGucggucgGCACGACGGAGAg -3'
miRNA:   3'- -GCGACga--------GCACCua-----UGUGCUGCUUCU- -5'
22606 5' -52 NC_005091.1 + 39065 0.68 0.793364
Target:  5'- uGUgaagGCUCGccgGGGUGCGCG-CGAGGc -3'
miRNA:   3'- gCGa---CGAGCa--CCUAUGUGCuGCUUCu -5'
22606 5' -52 NC_005091.1 + 6869 0.68 0.793364
Target:  5'- gGCUGuCUcCGUcgcacgcgcagcGGAagcggGCGCGACGAAGAa -3'
miRNA:   3'- gCGAC-GA-GCA------------CCUa----UGUGCUGCUUCU- -5'
22606 5' -52 NC_005091.1 + 1015 0.68 0.793364
Target:  5'- gCGCUGCUCGgcgucaAUACGACGGAa- -3'
miRNA:   3'- -GCGACGAGCaccua-UGUGCUGCUUcu -5'
22606 5' -52 NC_005091.1 + 7343 0.7 0.698835
Target:  5'- -aCUGCUCGUGGAacccgUugACGAcuucgagcaCGGAGAg -3'
miRNA:   3'- gcGACGAGCACCU-----AugUGCU---------GCUUCU- -5'
22606 5' -52 NC_005091.1 + 38030 0.7 0.698835
Target:  5'- aCGCUGCUCGc----AgACGGCGAAGAc -3'
miRNA:   3'- -GCGACGAGCaccuaUgUGCUGCUUCU- -5'
22606 5' -52 NC_005091.1 + 26147 0.71 0.621114
Target:  5'- uCGCUG-UCGUGGuaucagcgcGUGCGCGGCGAGc- -3'
miRNA:   3'- -GCGACgAGCACC---------UAUGUGCUGCUUcu -5'
22606 5' -52 NC_005091.1 + 4371 0.72 0.576681
Target:  5'- aGCUGCaugccaccuUCcc-GAUGCACGACGAAGAa -3'
miRNA:   3'- gCGACG---------AGcacCUAUGUGCUGCUUCU- -5'
22606 5' -52 NC_005091.1 + 29361 0.74 0.469914
Target:  5'- aCGCUGCacgCGacGGAUgGCGCGACGAAGc -3'
miRNA:   3'- -GCGACGa--GCa-CCUA-UGUGCUGCUUCu -5'
22606 5' -52 NC_005091.1 + 26183 0.75 0.399619
Target:  5'- uCGCUGCUCGaccgcauCACGACGggGAa -3'
miRNA:   3'- -GCGACGAGCaccuau-GUGCUGCuuCU- -5'
22606 5' -52 NC_005091.1 + 816 0.8 0.202524
Target:  5'- gCGCUGCcgCGUGGGUGUACGGCGgcGAu -3'
miRNA:   3'- -GCGACGa-GCACCUAUGUGCUGCuuCU- -5'
22606 5' -52 NC_005091.1 + 55810 0.83 0.149645
Target:  5'- cCGaCUGCUCG-GGcaaGUACGCGACGAAGAg -3'
miRNA:   3'- -GC-GACGAGCaCC---UAUGUGCUGCUUCU- -5'
22606 5' -52 NC_005091.1 + 31380 1.09 0.002462
Target:  5'- uCGCUGCUCGUGGAUACACGACGAAGAc -3'
miRNA:   3'- -GCGACGAGCACCUAUGUGCUGCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.