miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22607 3' -48.5 NC_005091.1 + 1117 0.66 0.985262
Target:  5'- cCCGAaGCGaaucucgcguuccgUCGuauuGACGCCGAGCAg -3'
miRNA:   3'- -GGCUaUGCa-------------AGCuuc-UUGCGGUUCGU- -5'
22607 3' -48.5 NC_005091.1 + 22961 0.66 0.984477
Target:  5'- cUCGAaGCGcUCGAAuGGGCGaCGAGCGu -3'
miRNA:   3'- -GGCUaUGCaAGCUU-CUUGCgGUUCGU- -5'
22607 3' -48.5 NC_005091.1 + 27474 0.66 0.984477
Target:  5'- aUCGGgaagcacACGUUCGAGGA-CG-CAGGCGg -3'
miRNA:   3'- -GGCUa------UGCAAGCUUCUuGCgGUUCGU- -5'
22607 3' -48.5 NC_005091.1 + 54083 0.66 0.984477
Target:  5'- cUCGAUucgcgccuugucGCGUUCGGuc-GCGCCGuGCAa -3'
miRNA:   3'- -GGCUA------------UGCAAGCUucuUGCGGUuCGU- -5'
22607 3' -48.5 NC_005091.1 + 23610 0.66 0.984477
Target:  5'- gCCGAUggcACGcagaaauggUCGGacgcauucaAGAACGUCGGGCAa -3'
miRNA:   3'- -GGCUA---UGCa--------AGCU---------UCUUGCGGUUCGU- -5'
22607 3' -48.5 NC_005091.1 + 41830 0.66 0.982375
Target:  5'- gCGAgGCGcUCGAAGAcccgaACGUCAucaAGCGg -3'
miRNA:   3'- gGCUaUGCaAGCUUCU-----UGCGGU---UCGU- -5'
22607 3' -48.5 NC_005091.1 + 16597 0.66 0.982375
Target:  5'- cUCGGUGCG-UCG-GGAAUGCCucccuGCGc -3'
miRNA:   3'- -GGCUAUGCaAGCuUCUUGCGGuu---CGU- -5'
22607 3' -48.5 NC_005091.1 + 2215 0.66 0.982375
Target:  5'- gCGGccugACGcUCGAcguGGAagACGCCAAGCc -3'
miRNA:   3'- gGCUa---UGCaAGCU---UCU--UGCGGUUCGu -5'
22607 3' -48.5 NC_005091.1 + 27547 0.66 0.982375
Target:  5'- cCCGAccaGUUCGggG-GCGUCAcGCGu -3'
miRNA:   3'- -GGCUaugCAAGCuuCuUGCGGUuCGU- -5'
22607 3' -48.5 NC_005091.1 + 8933 0.66 0.979082
Target:  5'- gCCGAgcaccugaaaaagACGcUCGAAGAACGCaaacGGCc -3'
miRNA:   3'- -GGCUa------------UGCaAGCUUCUUGCGgu--UCGu -5'
22607 3' -48.5 NC_005091.1 + 23201 0.66 0.977539
Target:  5'- uCCGAaccagACcg-CGAAGAAugcagcgcaggcCGCCAAGCAg -3'
miRNA:   3'- -GGCUa----UGcaaGCUUCUU------------GCGGUUCGU- -5'
22607 3' -48.5 NC_005091.1 + 17531 0.66 0.977539
Target:  5'- aCGAUAuCGUUgCGAAGAugcGCGgCCGggAGCGu -3'
miRNA:   3'- gGCUAU-GCAA-GCUUCU---UGC-GGU--UCGU- -5'
22607 3' -48.5 NC_005091.1 + 28196 0.66 0.977539
Target:  5'- gCGAUAUucgUCGgcGAGaCGCCGAGUu -3'
miRNA:   3'- gGCUAUGca-AGCuuCUU-GCGGUUCGu -5'
22607 3' -48.5 NC_005091.1 + 29614 0.67 0.974783
Target:  5'- cUCGGUGCGggCGAgcgGGAGgGCCGuacGCu -3'
miRNA:   3'- -GGCUAUGCaaGCU---UCUUgCGGUu--CGu -5'
22607 3' -48.5 NC_005091.1 + 1404 0.67 0.974783
Target:  5'- gCCGAUggGCGgcaUGccGAGCGCCAAGgAu -3'
miRNA:   3'- -GGCUA--UGCaa-GCuuCUUGCGGUUCgU- -5'
22607 3' -48.5 NC_005091.1 + 23373 0.67 0.974783
Target:  5'- uCCGGUGCagUCGucGGucaGCCGGGCGg -3'
miRNA:   3'- -GGCUAUGcaAGCuuCUug-CGGUUCGU- -5'
22607 3' -48.5 NC_005091.1 + 10127 0.67 0.971789
Target:  5'- gCGAgacggACGUUaCGccGGcacGCGCCGAGCGc -3'
miRNA:   3'- gGCUa----UGCAA-GCuuCU---UGCGGUUCGU- -5'
22607 3' -48.5 NC_005091.1 + 47863 0.67 0.971789
Target:  5'- uUCGAcGCuGUUCGGcAGuACGCCGGGUg -3'
miRNA:   3'- -GGCUaUG-CAAGCU-UCuUGCGGUUCGu -5'
22607 3' -48.5 NC_005091.1 + 13454 0.67 0.971789
Target:  5'- cCCGAgcCGUUUc--GAGCGCUAGGCc -3'
miRNA:   3'- -GGCUauGCAAGcuuCUUGCGGUUCGu -5'
22607 3' -48.5 NC_005091.1 + 50357 0.67 0.971789
Target:  5'- cCCGucuUGCuUUCGAacgcgcGGGcCGCCAAGCGu -3'
miRNA:   3'- -GGCu--AUGcAAGCU------UCUuGCGGUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.