miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22607 3' -48.5 NC_005091.1 + 8933 0.66 0.979082
Target:  5'- gCCGAgcaccugaaaaagACGcUCGAAGAACGCaaacGGCc -3'
miRNA:   3'- -GGCUa------------UGCaAGCUUCUUGCGgu--UCGu -5'
22607 3' -48.5 NC_005091.1 + 13454 0.67 0.971789
Target:  5'- cCCGAgcCGUUUc--GAGCGCUAGGCc -3'
miRNA:   3'- -GGCUauGCAAGcuuCUUGCGGUUCGu -5'
22607 3' -48.5 NC_005091.1 + 47863 0.67 0.971789
Target:  5'- uUCGAcGCuGUUCGGcAGuACGCCGGGUg -3'
miRNA:   3'- -GGCUaUG-CAAGCU-UCuUGCGGUUCGu -5'
22607 3' -48.5 NC_005091.1 + 10127 0.67 0.971789
Target:  5'- gCGAgacggACGUUaCGccGGcacGCGCCGAGCGc -3'
miRNA:   3'- gGCUa----UGCAA-GCuuCU---UGCGGUUCGU- -5'
22607 3' -48.5 NC_005091.1 + 50357 0.67 0.971789
Target:  5'- cCCGucuUGCuUUCGAacgcgcGGGcCGCCAAGCGu -3'
miRNA:   3'- -GGCu--AUGcAAGCU------UCUuGCGGUUCGU- -5'
22607 3' -48.5 NC_005091.1 + 1404 0.67 0.974783
Target:  5'- gCCGAUggGCGgcaUGccGAGCGCCAAGgAu -3'
miRNA:   3'- -GGCUA--UGCaa-GCuuCUUGCGGUUCgU- -5'
22607 3' -48.5 NC_005091.1 + 29614 0.67 0.974783
Target:  5'- cUCGGUGCGggCGAgcgGGAGgGCCGuacGCu -3'
miRNA:   3'- -GGCUAUGCaaGCU---UCUUgCGGUu--CGu -5'
22607 3' -48.5 NC_005091.1 + 28196 0.66 0.977539
Target:  5'- gCGAUAUucgUCGgcGAGaCGCCGAGUu -3'
miRNA:   3'- gGCUAUGca-AGCuuCUU-GCGGUUCGu -5'
22607 3' -48.5 NC_005091.1 + 17531 0.66 0.977539
Target:  5'- aCGAUAuCGUUgCGAAGAugcGCGgCCGggAGCGu -3'
miRNA:   3'- gGCUAU-GCAA-GCUUCU---UGC-GGU--UCGU- -5'
22607 3' -48.5 NC_005091.1 + 7050 0.67 0.968547
Target:  5'- --aGUACGggCaGGAGAAggcCGCCAAGCGa -3'
miRNA:   3'- ggcUAUGCaaG-CUUCUU---GCGGUUCGU- -5'
22607 3' -48.5 NC_005091.1 + 4164 0.67 0.961286
Target:  5'- gCCGucagguCGgcugGGAGAugGCCGAGCGg -3'
miRNA:   3'- -GGCuau---GCaag-CUUCUugCGGUUCGU- -5'
22607 3' -48.5 NC_005091.1 + 16825 0.68 0.957252
Target:  5'- aCCGucaGCGUauugUCGAuc-ACGCCAAGCu -3'
miRNA:   3'- -GGCua-UGCA----AGCUucuUGCGGUUCGu -5'
22607 3' -48.5 NC_005091.1 + 9238 0.71 0.826322
Target:  5'- gCGGUGCGgcccugCGAAGGGCGaCCGgccGGCGa -3'
miRNA:   3'- gGCUAUGCaa----GCUUCUUGC-GGU---UCGU- -5'
22607 3' -48.5 NC_005091.1 + 25872 0.71 0.85353
Target:  5'- gCCGAgGCGUUCGGcuuGCGCCu-GCAc -3'
miRNA:   3'- -GGCUaUGCAAGCUucuUGCGGuuCGU- -5'
22607 3' -48.5 NC_005091.1 + 10220 0.7 0.878508
Target:  5'- aCC-AUACGgaCGAcGAcaaGCGCCGAGCGg -3'
miRNA:   3'- -GGcUAUGCaaGCUuCU---UGCGGUUCGU- -5'
22607 3' -48.5 NC_005091.1 + 41743 0.7 0.901043
Target:  5'- uUGAUgACGUUCGGGucuucGAGCGCCucGCGa -3'
miRNA:   3'- gGCUA-UGCAAGCUU-----CUUGCGGuuCGU- -5'
22607 3' -48.5 NC_005091.1 + 8537 0.68 0.952493
Target:  5'- cCCGGagacccuaaauuaUGCGaUCGAAGAagACGaaCCGAGCAg -3'
miRNA:   3'- -GGCU-------------AUGCaAGCUUCU--UGC--GGUUCGU- -5'
22607 3' -48.5 NC_005091.1 + 35384 0.68 0.95294
Target:  5'- aCCGAUGCGUUCGccccGAgGCaguaguaGAGCAa -3'
miRNA:   3'- -GGCUAUGCAAGCuuc-UUgCGg------UUCGU- -5'
22607 3' -48.5 NC_005091.1 + 45574 0.68 0.956834
Target:  5'- gCCGAUgugaagcuggccgGCGUcggcuuccugaCGAAGAacACGCCGGGCGu -3'
miRNA:   3'- -GGCUA-------------UGCAa----------GCUUCU--UGCGGUUCGU- -5'
22607 3' -48.5 NC_005091.1 + 6041 0.68 0.957252
Target:  5'- uUCGG-GCGUUCGAGGAcgacggagACGCCAgaaAGUu -3'
miRNA:   3'- -GGCUaUGCAAGCUUCU--------UGCGGU---UCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.