miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22607 5' -52 NC_005091.1 + 18713 0.66 0.881008
Target:  5'- uGUGCGCCGG-GUUCAUCGccUUGa-- -3'
miRNA:   3'- cCGUGCGGCCaCAAGUAGCu-AGCaaa -5'
22607 5' -52 NC_005091.1 + 53208 0.66 0.881008
Target:  5'- aGCGCGCCGGU--UCGUCuAUgCGUUc -3'
miRNA:   3'- cCGUGCGGCCAcaAGUAGcUA-GCAAa -5'
22607 5' -52 NC_005091.1 + 51128 0.66 0.873154
Target:  5'- cGGCGCGCUGGcGUUCGUucuaucugaaCGG-CGUa- -3'
miRNA:   3'- -CCGUGCGGCCaCAAGUA----------GCUaGCAaa -5'
22607 5' -52 NC_005091.1 + 48153 0.67 0.856676
Target:  5'- aGGCGaGCCGGgGUUCuaaUGGUCGUg- -3'
miRNA:   3'- -CCGUgCGGCCaCAAGua-GCUAGCAaa -5'
22607 5' -52 NC_005091.1 + 20678 0.67 0.848067
Target:  5'- --aAUGCCGGUGUUCGg-GAUCGc-- -3'
miRNA:   3'- ccgUGCGGCCACAAGUagCUAGCaaa -5'
22607 5' -52 NC_005091.1 + 46503 0.67 0.829233
Target:  5'- uGCAUGCCGaGUucagcauGUUCAUCGA-CGUg- -3'
miRNA:   3'- cCGUGCGGC-CA-------CAAGUAGCUaGCAaa -5'
22607 5' -52 NC_005091.1 + 33955 0.68 0.811373
Target:  5'- gGGUACGCCGGgcggCGUCGGUagCGa-- -3'
miRNA:   3'- -CCGUGCGGCCacaaGUAGCUA--GCaaa -5'
22607 5' -52 NC_005091.1 + 6755 0.69 0.750714
Target:  5'- cGGCACGgucgcggaagucCCGGUGUUCGUgGA-CGa-- -3'
miRNA:   3'- -CCGUGC------------GGCCACAAGUAgCUaGCaaa -5'
22607 5' -52 NC_005091.1 + 18264 0.7 0.707611
Target:  5'- cGGCACGCCGuugaagcgGUUCAcgcucacgcUCGAUCGc-- -3'
miRNA:   3'- -CCGUGCGGCca------CAAGU---------AGCUAGCaaa -5'
22607 5' -52 NC_005091.1 + 47391 0.7 0.674435
Target:  5'- aGGUAUGCggCGGUGUUUAUCGuGUUGUa- -3'
miRNA:   3'- -CCGUGCG--GCCACAAGUAGC-UAGCAaa -5'
22607 5' -52 NC_005091.1 + 23378 0.71 0.62967
Target:  5'- cGCACuCCGGUGcagUCGUCGGUCa--- -3'
miRNA:   3'- cCGUGcGGCCACa--AGUAGCUAGcaaa -5'
22607 5' -52 NC_005091.1 + 19550 0.72 0.573829
Target:  5'- gGGCACGCCGcaggccgucGUGUUCggCGAUUGc-- -3'
miRNA:   3'- -CCGUGCGGC---------CACAAGuaGCUAGCaaa -5'
22607 5' -52 NC_005091.1 + 31661 1.08 0.002598
Target:  5'- gGGCACGCCGGUGUUCAUCGAUCGUUUg -3'
miRNA:   3'- -CCGUGCGGCCACAAGUAGCUAGCAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.