miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22608 3' -60.8 NC_005091.1 + 15222 0.65 0.453583
Target:  5'- cGaGUGuuUGCcacguagccguccCGCUGCCGCCGCGCg- -3'
miRNA:   3'- uC-CACu-ACGa------------GCGACGGCGGCGUGgc -5'
22608 3' -60.8 NC_005091.1 + 35142 0.66 0.438451
Target:  5'- -uGUGGUacGCgUCGCggcGCCGCCGCgagguacuGCCGg -3'
miRNA:   3'- ucCACUA--CG-AGCGa--CGGCGGCG--------UGGC- -5'
22608 3' -60.8 NC_005091.1 + 26755 0.66 0.438451
Target:  5'- cGGUauUGaaCGcCUGCgaCGCCGCACCGg -3'
miRNA:   3'- uCCAcuACgaGC-GACG--GCGGCGUGGC- -5'
22608 3' -60.8 NC_005091.1 + 53414 0.66 0.429141
Target:  5'- uAGGUGAU-CUCGCUgGCCGUgcauuCGC-CCu -3'
miRNA:   3'- -UCCACUAcGAGCGA-CGGCG-----GCGuGGc -5'
22608 3' -60.8 NC_005091.1 + 33721 0.66 0.419948
Target:  5'- uGGUGAaGUccCGaUGCCGCCGgGCCa -3'
miRNA:   3'- uCCACUaCGa-GCgACGGCGGCgUGGc -5'
22608 3' -60.8 NC_005091.1 + 26701 0.66 0.419948
Target:  5'- -cGUGAacucgacaaGCUUGCUGCUGCgGCgGCCGg -3'
miRNA:   3'- ucCACUa--------CGAGCGACGGCGgCG-UGGC- -5'
22608 3' -60.8 NC_005091.1 + 45690 0.66 0.399266
Target:  5'- cGG-GAUgGCUC-CUGUacgcgucggccgcgCGCCGCGCCGg -3'
miRNA:   3'- uCCaCUA-CGAGcGACG--------------GCGGCGUGGC- -5'
22608 3' -60.8 NC_005091.1 + 56964 0.67 0.364888
Target:  5'- cGGUGAUGCUCgaaugcgacgcagaGCggGCCGgCCGUGCa- -3'
miRNA:   3'- uCCACUACGAG--------------CGa-CGGC-GGCGUGgc -5'
22608 3' -60.8 NC_005091.1 + 46274 0.67 0.359086
Target:  5'- gAGGccgcGCUCGUgGCCGUCGUACUGg -3'
miRNA:   3'- -UCCacuaCGAGCGaCGGCGGCGUGGC- -5'
22608 3' -60.8 NC_005091.1 + 52892 0.67 0.35091
Target:  5'- uGGcuUGAUGCU-GCUGCCGCgUGCGgCCu -3'
miRNA:   3'- uCC--ACUACGAgCGACGGCG-GCGU-GGc -5'
22608 3' -60.8 NC_005091.1 + 7419 0.67 0.35091
Target:  5'- uGGacaaGUUCGUcGCCGCCGCACUGc -3'
miRNA:   3'- uCCacuaCGAGCGaCGGCGGCGUGGC- -5'
22608 3' -60.8 NC_005091.1 + 34709 0.68 0.312036
Target:  5'- ---cGAUGCUgucgCGCUgauaGCCGaCCGCGCCGu -3'
miRNA:   3'- uccaCUACGA----GCGA----CGGC-GGCGUGGC- -5'
22608 3' -60.8 NC_005091.1 + 35318 0.7 0.256802
Target:  5'- --aUGAU-CUCGCgaaaaucGCCGCCGCGCUGg -3'
miRNA:   3'- uccACUAcGAGCGa------CGGCGGCGUGGC- -5'
22608 3' -60.8 NC_005091.1 + 7280 0.7 0.256802
Target:  5'- cGGcc--GCUCGCUGCuCGCCGCcauCCGu -3'
miRNA:   3'- uCCacuaCGAGCGACG-GCGGCGu--GGC- -5'
22608 3' -60.8 NC_005091.1 + 26580 0.71 0.19931
Target:  5'- uGGGUGAgucGUUCGaagucccgGCCGCCGCcgGCCGc -3'
miRNA:   3'- -UCCACUa--CGAGCga------CGGCGGCG--UGGC- -5'
22608 3' -60.8 NC_005091.1 + 26311 0.71 0.194223
Target:  5'- cGGGcUGccGCUCaggccgaaGCUGCCGCCGCGUCGa -3'
miRNA:   3'- -UCC-ACuaCGAG--------CGACGGCGGCGUGGC- -5'
22608 3' -60.8 NC_005091.1 + 4908 0.72 0.189249
Target:  5'- ------cGCUugacCGUUGCCGCCGCGCCGa -3'
miRNA:   3'- uccacuaCGA----GCGACGGCGGCGUGGC- -5'
22608 3' -60.8 NC_005091.1 + 23014 0.72 0.174995
Target:  5'- -uGUGAUGacgguaUCGcCUGCCGCCGaCGCCa -3'
miRNA:   3'- ucCACUACg-----AGC-GACGGCGGC-GUGGc -5'
22608 3' -60.8 NC_005091.1 + 9274 0.73 0.161706
Target:  5'- uGGUcGAcUGCUCGCcgcugGCCGCCG-ACCGg -3'
miRNA:   3'- uCCA-CU-ACGAGCGa----CGGCGGCgUGGC- -5'
22608 3' -60.8 NC_005091.1 + 25228 0.74 0.134175
Target:  5'- cGGUcGGUGCguccgggGCgGCCGCUGCACCGg -3'
miRNA:   3'- uCCA-CUACGag-----CGaCGGCGGCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.