miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22608 5' -54.8 NC_005091.1 + 31123 0.66 0.750991
Target:  5'- aUUCGAUCCGGUucuCGAUGCGcuGGCGc--- -3'
miRNA:   3'- -AGGCUAGGCCG---GCUAUGC--UCGUucuu -5'
22608 5' -54.8 NC_005091.1 + 32201 0.66 0.708466
Target:  5'- uUCCGGUgCGGCgGcaGCGAGCAu--- -3'
miRNA:   3'- -AGGCUAgGCCGgCuaUGCUCGUucuu -5'
22608 5' -54.8 NC_005091.1 + 44215 0.66 0.707384
Target:  5'- cCCGAUCaucugcuCGGCaCGGU-CGAGCAGGu- -3'
miRNA:   3'- aGGCUAG-------GCCG-GCUAuGCUCGUUCuu -5'
22608 5' -54.8 NC_005091.1 + 16292 0.67 0.686703
Target:  5'- cCUGAUCCgGGCgCGAcgGCGGGCGcGAc -3'
miRNA:   3'- aGGCUAGG-CCG-GCUa-UGCUCGUuCUu -5'
22608 5' -54.8 NC_005091.1 + 2132 0.67 0.685609
Target:  5'- gCCGGUaagcgcgUCGGCCGAaGCGgaacuGGCGAGGAu -3'
miRNA:   3'- aGGCUA-------GGCCGGCUaUGC-----UCGUUCUU- -5'
22608 5' -54.8 NC_005091.1 + 36410 0.67 0.653688
Target:  5'- cUUCGAUCCGGCCGccGC-AGCAcGGc -3'
miRNA:   3'- -AGGCUAGGCCGGCuaUGcUCGUuCUu -5'
22608 5' -54.8 NC_005091.1 + 9363 0.67 0.653688
Target:  5'- gCCGGUCggCGGCCaGcgGCGAGCAGu-- -3'
miRNA:   3'- aGGCUAG--GCCGG-CuaUGCUCGUUcuu -5'
22608 5' -54.8 NC_005091.1 + 29016 0.68 0.609433
Target:  5'- cCCGAUCaCGGCCucGAUgccgacgagaACGGGCAGGc- -3'
miRNA:   3'- aGGCUAG-GCCGG--CUA----------UGCUCGUUCuu -5'
22608 5' -54.8 NC_005091.1 + 41010 0.69 0.533073
Target:  5'- aCgGAgacgCCGGCCGGggccgACGAGgGAGAc -3'
miRNA:   3'- aGgCUa---GGCCGGCUa----UGCUCgUUCUu -5'
22608 5' -54.8 NC_005091.1 + 14749 0.7 0.470474
Target:  5'- gUCGGcCCGGCCGAUACGA-CGAGc- -3'
miRNA:   3'- aGGCUaGGCCGGCUAUGCUcGUUCuu -5'
22608 5' -54.8 NC_005091.1 + 31760 0.7 0.470474
Target:  5'- gUCCGAggCGGCCGGguuccacggcACGAGCAGGc- -3'
miRNA:   3'- -AGGCUagGCCGGCUa---------UGCUCGUUCuu -5'
22608 5' -54.8 NC_005091.1 + 7173 0.7 0.470474
Target:  5'- --aGAcCCGcGCCGAcACGAGCAAGAc -3'
miRNA:   3'- aggCUaGGC-CGGCUaUGCUCGUUCUu -5'
22608 5' -54.8 NC_005091.1 + 29608 0.72 0.411834
Target:  5'- gCCGAUCuCGGUgCGG-GCGAGCGGGAGg -3'
miRNA:   3'- aGGCUAG-GCCG-GCUaUGCUCGUUCUU- -5'
22608 5' -54.8 NC_005091.1 + 32252 1.06 0.001743
Target:  5'- uUCCGAUCCGGCCGAUACGAGCAAGAAc -3'
miRNA:   3'- -AGGCUAGGCCGGCUAUGCUCGUUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.