miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22609 3' -55 NC_005091.1 + 23312 0.65 0.74216
Target:  5'- cCGGAGUGCGcaaUGGCAGCAGGCaCGg- -3'
miRNA:   3'- -GUCUCGCGCcg-GCUGUUGUUUG-GCaa -5'
22609 3' -55 NC_005091.1 + 34837 0.66 0.731551
Target:  5'- ---cGCGCGGCCGG-GACAuGGCCGa- -3'
miRNA:   3'- gucuCGCGCCGGCUgUUGU-UUGGCaa -5'
22609 3' -55 NC_005091.1 + 51601 0.66 0.731551
Target:  5'- gCAGaAGCGCGGCacgggcgcgauuCGGCAugAuauGCCGa- -3'
miRNA:   3'- -GUC-UCGCGCCG------------GCUGUugUu--UGGCaa -5'
22609 3' -55 NC_005091.1 + 17880 0.66 0.72084
Target:  5'- -cGAGauCGGCCGGCGACAA-CUGg- -3'
miRNA:   3'- guCUCgcGCCGGCUGUUGUUuGGCaa -5'
22609 3' -55 NC_005091.1 + 6187 0.66 0.719764
Target:  5'- --uAGCGCGggggcuuGCgGGCGACGAGCCGa- -3'
miRNA:   3'- gucUCGCGC-------CGgCUGUUGUUUGGCaa -5'
22609 3' -55 NC_005091.1 + 14536 0.66 0.710039
Target:  5'- cCGGGGCGaCGGCUGcuuGCAACuggacGCCGa- -3'
miRNA:   3'- -GUCUCGC-GCCGGC---UGUUGuu---UGGCaa -5'
22609 3' -55 NC_005091.1 + 33057 0.66 0.699161
Target:  5'- uGGAGCG-GGauGAUAGCAAGcCCGUUg -3'
miRNA:   3'- gUCUCGCgCCggCUGUUGUUU-GGCAA- -5'
22609 3' -55 NC_005091.1 + 3424 0.66 0.699161
Target:  5'- gCAGGGUGCauUCGACAACGcuaucGACCGUg -3'
miRNA:   3'- -GUCUCGCGccGGCUGUUGU-----UUGGCAa -5'
22609 3' -55 NC_005091.1 + 13163 0.66 0.699161
Target:  5'- aAGGGCGUGcaucGCCGAgAACGuauCCGUUc -3'
miRNA:   3'- gUCUCGCGC----CGGCUgUUGUuu-GGCAA- -5'
22609 3' -55 NC_005091.1 + 46236 0.66 0.688216
Target:  5'- uCGGAGa-CGGCCGACAACuacGACgCGa- -3'
miRNA:   3'- -GUCUCgcGCCGGCUGUUGu--UUG-GCaa -5'
22609 3' -55 NC_005091.1 + 4828 0.66 0.687118
Target:  5'- --cGGCGCGG-CGGCAACGgucaagcgggcgaAGCCGUa -3'
miRNA:   3'- gucUCGCGCCgGCUGUUGU-------------UUGGCAa -5'
22609 3' -55 NC_005091.1 + 9235 0.67 0.677216
Target:  5'- cCGGcGGUGCGGCCcugcgaagGGCGACcGGCCGg- -3'
miRNA:   3'- -GUC-UCGCGCCGG--------CUGUUGuUUGGCaa -5'
22609 3' -55 NC_005091.1 + 26424 0.67 0.632892
Target:  5'- cCGGGGCugccaucguaGCGGCCGgGCGcgaGCAGGCCGc- -3'
miRNA:   3'- -GUCUCG----------CGCCGGC-UGU---UGUUUGGCaa -5'
22609 3' -55 NC_005091.1 + 21184 0.67 0.632892
Target:  5'- gCAGGuauGCGCGGCgCGACuGCGAguAUCGUg -3'
miRNA:   3'- -GUCU---CGCGCCG-GCUGuUGUU--UGGCAa -5'
22609 3' -55 NC_005091.1 + 1191 0.67 0.632892
Target:  5'- aGGAGaUGCGuGUCGAUcGCGAGCCGg- -3'
miRNA:   3'- gUCUC-GCGC-CGGCUGuUGUUUGGCaa -5'
22609 3' -55 NC_005091.1 + 7195 0.68 0.620672
Target:  5'- uGGcGGCGCGuuaccuucgucuuGCCGGCAGCGgcGGCCGUc -3'
miRNA:   3'- gUC-UCGCGC-------------CGGCUGUUGU--UUGGCAa -5'
22609 3' -55 NC_005091.1 + 55810 0.68 0.610683
Target:  5'- aGGGGCGCgGGCCGuCAGCGucACgGUc -3'
miRNA:   3'- gUCUCGCG-CCGGCuGUUGUu-UGgCAa -5'
22609 3' -55 NC_005091.1 + 26678 0.68 0.566565
Target:  5'- ---uGCgGCGGCCGGCGGC-GGCCGg- -3'
miRNA:   3'- gucuCG-CGCCGGCUGUUGuUUGGCaa -5'
22609 3' -55 NC_005091.1 + 44823 0.68 0.566565
Target:  5'- aAGGGCgGCGGCaaGGCAGCAAcgaaGCCGa- -3'
miRNA:   3'- gUCUCG-CGCCGg-CUGUUGUU----UGGCaa -5'
22609 3' -55 NC_005091.1 + 13079 0.68 0.566565
Target:  5'- -cGAGcCGUGGCUGGCGGCAGGCa--- -3'
miRNA:   3'- guCUC-GCGCCGGCUGUUGUUUGgcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.