miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22609 3' -55 NC_005091.1 + 45335 0.69 0.52011
Target:  5'- gCAGAguuccgggcgcaacGCGCGGCCGguagACGACAGagcGCCGa- -3'
miRNA:   3'- -GUCU--------------CGCGCCGGC----UGUUGUU---UGGCaa -5'
22609 3' -55 NC_005091.1 + 52946 0.69 0.512683
Target:  5'- -uGAuCGCGGCCGGCugcaAACAAAUCGUc -3'
miRNA:   3'- guCUcGCGCCGGCUG----UUGUUUGGCAa -5'
22609 3' -55 NC_005091.1 + 52787 0.69 0.512683
Target:  5'- uCAGGGaCGCGG-CGGCGAuCAGGCCGc- -3'
miRNA:   3'- -GUCUC-GCGCCgGCUGUU-GUUUGGCaa -5'
22609 3' -55 NC_005091.1 + 34418 0.7 0.502149
Target:  5'- --aAGCGCGGCCGGCcGCAGggcuACUGg- -3'
miRNA:   3'- gucUCGCGCCGGCUGuUGUU----UGGCaa -5'
22609 3' -55 NC_005091.1 + 51912 0.7 0.491711
Target:  5'- uCAG-GCGCGGCaCGaaggaaaacaGCAACAcGCCGUg -3'
miRNA:   3'- -GUCuCGCGCCG-GC----------UGUUGUuUGGCAa -5'
22609 3' -55 NC_005091.1 + 17545 0.7 0.451024
Target:  5'- aAGAuGCGCGGCCGGgAGCGugUCGa- -3'
miRNA:   3'- gUCU-CGCGCCGGCUgUUGUuuGGCaa -5'
22609 3' -55 NC_005091.1 + 27883 0.71 0.441142
Target:  5'- aCGGAGCGCGuGUaccuCGACGGCcGGCCGa- -3'
miRNA:   3'- -GUCUCGCGC-CG----GCUGUUGuUUGGCaa -5'
22609 3' -55 NC_005091.1 + 12373 0.71 0.441142
Target:  5'- -cGAGCGCGGCCagugcgacGGCGGCGAcuacgGCCGc- -3'
miRNA:   3'- guCUCGCGCCGG--------CUGUUGUU-----UGGCaa -5'
22609 3' -55 NC_005091.1 + 24674 0.71 0.412253
Target:  5'- aCAGGGCGCGcGCCuuGCAACGAcGCCGc- -3'
miRNA:   3'- -GUCUCGCGC-CGGc-UGUUGUU-UGGCaa -5'
22609 3' -55 NC_005091.1 + 26483 0.72 0.393657
Target:  5'- gCAG-GCuGCGGCUGccGCAGCAGACCGc- -3'
miRNA:   3'- -GUCuCG-CGCCGGC--UGUUGUUUGGCaa -5'
22609 3' -55 NC_005091.1 + 45781 0.72 0.358135
Target:  5'- gCGGcGCGCGGCCGACGcguACAggAGCCa-- -3'
miRNA:   3'- -GUCuCGCGCCGGCUGU---UGU--UUGGcaa -5'
22609 3' -55 NC_005091.1 + 24745 0.78 0.146824
Target:  5'- gCGGAGCGCgauaaagcacuGGCCGACAACAAGgCGg- -3'
miRNA:   3'- -GUCUCGCG-----------CCGGCUGUUGUUUgGCaa -5'
22609 3' -55 NC_005091.1 + 33177 1.04 0.002177
Target:  5'- uCAGAGCGCGGCCGACAACAAACCGUUu -3'
miRNA:   3'- -GUCUCGCGCCGGCUGUUGUUUGGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.