miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22609 5' -53.8 NC_005091.1 + 55215 0.66 0.811044
Target:  5'- uUCGACGcGGCccgUGCgcgGggGUCCgGCUCg -3'
miRNA:   3'- -GGUUGC-CCGa--ACGa--UagUAGGgCGAG- -5'
22609 5' -53.8 NC_005091.1 + 13907 0.66 0.791644
Target:  5'- uUCAGCGGGCgcaGCgugacgGUCAgCacgaCGCUCg -3'
miRNA:   3'- -GGUUGCCCGaa-CGa-----UAGUaGg---GCGAG- -5'
22609 5' -53.8 NC_005091.1 + 48978 0.66 0.781683
Target:  5'- -uGGCGGGCgcGCUAaauGUCCCGUUg -3'
miRNA:   3'- ggUUGCCCGaaCGAUag-UAGGGCGAg -5'
22609 5' -53.8 NC_005091.1 + 50631 0.66 0.771565
Target:  5'- aCguACGcGGCggccgGUUcGUCGUUCCGCUCg -3'
miRNA:   3'- -GguUGC-CCGaa---CGA-UAGUAGGGCGAG- -5'
22609 5' -53.8 NC_005091.1 + 20477 0.66 0.771565
Target:  5'- uUCAACGGGCgaccGC-----UCCUGCUCg -3'
miRNA:   3'- -GGUUGCCCGaa--CGauaguAGGGCGAG- -5'
22609 5' -53.8 NC_005091.1 + 25716 0.67 0.7613
Target:  5'- -gAACGuGCccUGCaUGUCAUCCgCGCUCa -3'
miRNA:   3'- ggUUGCcCGa-ACG-AUAGUAGG-GCGAG- -5'
22609 5' -53.8 NC_005091.1 + 9071 0.67 0.7509
Target:  5'- aCAGCGGGCUUuuCUGUaCGaCgCGCUCg -3'
miRNA:   3'- gGUUGCCCGAAc-GAUA-GUaGgGCGAG- -5'
22609 5' -53.8 NC_005091.1 + 57241 0.67 0.740376
Target:  5'- aCCAACcGGaCaaGCcgAUCAUCCCGCa- -3'
miRNA:   3'- -GGUUGcCC-GaaCGa-UAGUAGGGCGag -5'
22609 5' -53.8 NC_005091.1 + 48713 0.68 0.697285
Target:  5'- gCGGCGGGCUgcUGCgUGUUgguGUCgCCGCgUCa -3'
miRNA:   3'- gGUUGCCCGA--ACG-AUAG---UAG-GGCG-AG- -5'
22609 5' -53.8 NC_005091.1 + 32854 0.68 0.653161
Target:  5'- gCCAugAUGGGCUUu---UCGUCCCGCg- -3'
miRNA:   3'- -GGU--UGCCCGAAcgauAGUAGGGCGag -5'
22609 5' -53.8 NC_005091.1 + 19649 0.69 0.59763
Target:  5'- uCgAACGGGCUacgGCcgggCAUCCCGUUa -3'
miRNA:   3'- -GgUUGCCCGAa--CGaua-GUAGGGCGAg -5'
22609 5' -53.8 NC_005091.1 + 3694 0.7 0.586575
Target:  5'- gCCAuCGGGCUUGacgAUUuUCCCGUUg -3'
miRNA:   3'- -GGUuGCCCGAACga-UAGuAGGGCGAg -5'
22609 5' -53.8 NC_005091.1 + 29396 0.71 0.510738
Target:  5'- aCCu-CGGGCUUGCUGUaCGUCUCaGCc- -3'
miRNA:   3'- -GGuuGCCCGAACGAUA-GUAGGG-CGag -5'
22609 5' -53.8 NC_005091.1 + 52347 0.73 0.401104
Target:  5'- aCUAAgGGGCUUGCcAUgAUCaCGCUCg -3'
miRNA:   3'- -GGUUgCCCGAACGaUAgUAGgGCGAG- -5'
22609 5' -53.8 NC_005091.1 + 33143 1.1 0.001143
Target:  5'- uCCAACGGGCUUGCUAUCAUCCCGCUCc -3'
miRNA:   3'- -GGUUGCCCGAACGAUAGUAGGGCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.