miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2261 5' -57.8 NC_001405.1 + 16296 0.66 0.44463
Target:  5'- -cGCCCGUcgGCCGgUGcGACGUGCg-- -3'
miRNA:   3'- aaCGGGCG--CGGUgGCuCUGCAUGaag -5'
2261 5' -57.8 NC_001405.1 + 11231 0.66 0.44463
Target:  5'- -gGCCCgGCGCCGCgGGGGuuCGUAa-UCa -3'
miRNA:   3'- aaCGGG-CGCGGUGgCUCU--GCAUgaAG- -5'
2261 5' -57.8 NC_001405.1 + 12120 0.66 0.424832
Target:  5'- cUGCCCGUGCCAgCCaGGGCccuuugcaggcuGUGCaUCa -3'
miRNA:   3'- aACGGGCGCGGU-GGcUCUG------------CAUGaAG- -5'
2261 5' -57.8 NC_001405.1 + 16008 0.66 0.396145
Target:  5'- gUGCCCGCGCacgcgCACUGGG-UGUuggucgagcGCUUCu -3'
miRNA:   3'- aACGGGCGCG-----GUGGCUCuGCA---------UGAAG- -5'
2261 5' -57.8 NC_001405.1 + 21870 0.66 0.395211
Target:  5'- -cGCCUGCGCCauagucaauacgGCCGgucgcgagacuggGGGCGUACa-- -3'
miRNA:   3'- aaCGGGCGCGG------------UGGC-------------UCUGCAUGaag -5'
2261 5' -57.8 NC_001405.1 + 8620 0.67 0.386864
Target:  5'- -cGCCCGCGUCACCGcuuuuAGAU--GCaUCa -3'
miRNA:   3'- aaCGGGCGCGGUGGC-----UCUGcaUGaAG- -5'
2261 5' -57.8 NC_001405.1 + 23884 0.67 0.368738
Target:  5'- -aGCCCGCgGCCAUCGAccucGACGgcggAUUUg -3'
miRNA:   3'- aaCGGGCG-CGGUGGCU----CUGCa---UGAAg -5'
2261 5' -57.8 NC_001405.1 + 9541 0.67 0.359895
Target:  5'- -cGgCCGCGCCgucACCGAGACcaUGCgccgUCg -3'
miRNA:   3'- aaCgGGCGCGG---UGGCUCUGc-AUGa---AG- -5'
2261 5' -57.8 NC_001405.1 + 17359 0.67 0.351202
Target:  5'- -cGCCCGCGCCGuuCCaGGAaGUACggCa -3'
miRNA:   3'- aaCGGGCGCGGU--GGcUCUgCAUGaaG- -5'
2261 5' -57.8 NC_001405.1 + 26634 0.68 0.326026
Target:  5'- gUGCCCGCGCCA-CGAG-CGguagcCUUg -3'
miRNA:   3'- aACGGGCGCGGUgGCUCuGCau---GAAg -5'
2261 5' -57.8 NC_001405.1 + 12366 0.68 0.326026
Target:  5'- -cGCCCGCaCCGCCGGGucCGUuGCgUCu -3'
miRNA:   3'- aaCGGGCGcGGUGGCUCu-GCA-UGaAG- -5'
2261 5' -57.8 NC_001405.1 + 12532 0.68 0.317936
Target:  5'- -gGUuuGCGCgCGCCGGGACcaccGCUUCc -3'
miRNA:   3'- aaCGggCGCG-GUGGCUCUGca--UGAAG- -5'
2261 5' -57.8 NC_001405.1 + 13735 0.69 0.279765
Target:  5'- -cGCCCGCGCCugCuGGGCGa----- -3'
miRNA:   3'- aaCGGGCGCGGugGcUCUGCaugaag -5'
2261 5' -57.8 NC_001405.1 + 17828 0.69 0.279765
Target:  5'- gUGCgacgCGCGCCGCCGccGGugGUGCg-- -3'
miRNA:   3'- aACGg---GCGCGGUGGC--UCugCAUGaag -5'
2261 5' -57.8 NC_001405.1 + 8695 0.69 0.258662
Target:  5'- cUGCCCGCGCgCGgCGccGACGUGCc-- -3'
miRNA:   3'- aACGGGCGCG-GUgGCu-CUGCAUGaag -5'
2261 5' -57.8 NC_001405.1 + 23608 0.76 0.088983
Target:  5'- --cCCCGCGCCACUGGGuCGU-CUUCa -3'
miRNA:   3'- aacGGGCGCGGUGGCUCuGCAuGAAG- -5'
2261 5' -57.8 NC_001405.1 + 18910 1.07 0.000349
Target:  5'- uUUGCCCGCGCCACCGAGACGUACUUCa -3'
miRNA:   3'- -AACGGGCGCGGUGGCUCUGCAUGAAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.