miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22610 3' -58.4 NC_005091.1 + 52892 0.66 0.58602
Target:  5'- uGGCuUGAuGCuGCUgcCGCGuGCGGCCu -3'
miRNA:   3'- cCUGuACUuCGuCGA--GCGC-CGCCGGc -5'
22610 3' -58.4 NC_005091.1 + 36300 0.66 0.58602
Target:  5'- aGACGcaaUGc-GCgAGCgUCGCGGCGuGCCGa -3'
miRNA:   3'- cCUGU---ACuuCG-UCG-AGCGCCGC-CGGC- -5'
22610 3' -58.4 NC_005091.1 + 5835 0.66 0.575389
Target:  5'- cGGCucGAAGCGGUgCGCGGCGuGCg- -3'
miRNA:   3'- cCUGuaCUUCGUCGaGCGCCGC-CGgc -5'
22610 3' -58.4 NC_005091.1 + 23347 0.66 0.575389
Target:  5'- cGGCAUGucgcGCAGUgCGuCGGCGaGCUGg -3'
miRNA:   3'- cCUGUACuu--CGUCGaGC-GCCGC-CGGC- -5'
22610 3' -58.4 NC_005091.1 + 55032 0.66 0.572208
Target:  5'- gGGACAgccgcGCGGCgcuuggcgagcgcgUUGCGGCGGCg- -3'
miRNA:   3'- -CCUGUacuu-CGUCG--------------AGCGCCGCCGgc -5'
22610 3' -58.4 NC_005091.1 + 35251 0.66 0.564803
Target:  5'- ---gAUGAugcaaccugccGGCAGUaccUCGCGGCGGCg- -3'
miRNA:   3'- ccugUACU-----------UCGUCG---AGCGCCGCCGgc -5'
22610 3' -58.4 NC_005091.1 + 25234 0.66 0.564803
Target:  5'- uGGCGgcgGucGguGCgucCGgGGCGGCCGc -3'
miRNA:   3'- cCUGUa--CuuCguCGa--GCgCCGCCGGC- -5'
22610 3' -58.4 NC_005091.1 + 42432 0.66 0.563747
Target:  5'- cGGACGgcgagGAAGCgcucgccgagGGCUaCGacgacaaCGGCGGCCu -3'
miRNA:   3'- -CCUGUa----CUUCG----------UCGA-GC-------GCCGCCGGc -5'
22610 3' -58.4 NC_005091.1 + 20209 0.66 0.554269
Target:  5'- cGGACAcGAAGCGGaCguggCGUGGaugGGCaCGg -3'
miRNA:   3'- -CCUGUaCUUCGUC-Ga---GCGCCg--CCG-GC- -5'
22610 3' -58.4 NC_005091.1 + 51144 0.66 0.554269
Target:  5'- cGGGCGUugaucGAAGCGGCgCGCuGGCGuuCGu -3'
miRNA:   3'- -CCUGUA-----CUUCGUCGaGCG-CCGCcgGC- -5'
22610 3' -58.4 NC_005091.1 + 31874 0.66 0.554269
Target:  5'- --cCGUGucGUcgcGCUCGuCGGCGGCCu -3'
miRNA:   3'- ccuGUACuuCGu--CGAGC-GCCGCCGGc -5'
22610 3' -58.4 NC_005091.1 + 35887 0.66 0.553218
Target:  5'- cGGCcggGUGAuGCAGCUCaaaaugaccuucuGCgauuccGGCGGCCGg -3'
miRNA:   3'- cCUG---UACUuCGUCGAG-------------CG------CCGCCGGC- -5'
22610 3' -58.4 NC_005091.1 + 45996 0.66 0.543793
Target:  5'- uGGACGcUGAAGaagcGCUCGCGcacCGcGCCGg -3'
miRNA:   3'- -CCUGU-ACUUCgu--CGAGCGCc--GC-CGGC- -5'
22610 3' -58.4 NC_005091.1 + 14827 0.66 0.540662
Target:  5'- gGGACAUGGGcuacgacuccggguGCuacggcGCUCGCaaGCGGCCu -3'
miRNA:   3'- -CCUGUACUU--------------CGu-----CGAGCGc-CGCCGGc -5'
22610 3' -58.4 NC_005091.1 + 45860 0.66 0.533382
Target:  5'- cGGACAcGAAGCGGC-CGUacGaGUGGCUc -3'
miRNA:   3'- -CCUGUaCUUCGUCGaGCG--C-CGCCGGc -5'
22610 3' -58.4 NC_005091.1 + 22946 0.66 0.533382
Target:  5'- uGGGCGacGAGcguGCAGCaaUCGaauauGGCGGCCGa -3'
miRNA:   3'- -CCUGUa-CUU---CGUCG--AGCg----CCGCCGGC- -5'
22610 3' -58.4 NC_005091.1 + 34046 0.67 0.523044
Target:  5'- cGGACAucugcgaauggaUGAacucgggcGGCAGCUCGgacuCGauaGCGGCCGc -3'
miRNA:   3'- -CCUGU------------ACU--------UCGUCGAGC----GC---CGCCGGC- -5'
22610 3' -58.4 NC_005091.1 + 4047 0.67 0.516878
Target:  5'- cGGAUuc-AGGCGGggcguuucucaccaUCGUGGCGGCCGc -3'
miRNA:   3'- -CCUGuacUUCGUCg-------------AGCGCCGCCGGC- -5'
22610 3' -58.4 NC_005091.1 + 35126 0.67 0.512784
Target:  5'- cGGCcgGucAGCAGCuugugguacgcgUCGCGGCGccGCCGc -3'
miRNA:   3'- cCUGuaCu-UCGUCG------------AGCGCCGC--CGGC- -5'
22610 3' -58.4 NC_005091.1 + 44884 0.67 0.512784
Target:  5'- aGGCGguacGGGCGGCggCaaGGCGGCCGa -3'
miRNA:   3'- cCUGUac--UUCGUCGa-GcgCCGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.