miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22610 5' -48.6 NC_005091.1 + 12667 0.66 0.980506
Target:  5'- -cCGGGCGCGcgaauCGGCcacgcagauucaaUUCAUGAAGGa -3'
miRNA:   3'- gaGCUUGUGCu----GCUG-------------AAGUACUUCCa -5'
22610 5' -48.6 NC_005091.1 + 43744 0.66 0.975569
Target:  5'- uUCGcuu-CGcCGAUUUCGUGAAGGUc -3'
miRNA:   3'- gAGCuuguGCuGCUGAAGUACUUCCA- -5'
22610 5' -48.6 NC_005091.1 + 23264 0.66 0.975569
Target:  5'- -aUGAACagGCGGCGAucCUUCA-GAAGGg -3'
miRNA:   3'- gaGCUUG--UGCUGCU--GAAGUaCUUCCa -5'
22610 5' -48.6 NC_005091.1 + 16274 0.67 0.969445
Target:  5'- -gCGGGCGCGACGAaguacCUcCGUGAAGa- -3'
miRNA:   3'- gaGCUUGUGCUGCU-----GAaGUACUUCca -5'
22610 5' -48.6 NC_005091.1 + 16518 0.67 0.966003
Target:  5'- gUCGAGCAUGGCGACgc--UGucGGa -3'
miRNA:   3'- gAGCUUGUGCUGCUGaaguACuuCCa -5'
22610 5' -48.6 NC_005091.1 + 11685 0.67 0.962297
Target:  5'- gCUCGAugGCG-CGGCUcucuuUCAgguguUGAAGGc -3'
miRNA:   3'- -GAGCUugUGCuGCUGA-----AGU-----ACUUCCa -5'
22610 5' -48.6 NC_005091.1 + 6897 0.67 0.954063
Target:  5'- -gCGGGCGCGACGAagaaagagaUCAUGgcGGa -3'
miRNA:   3'- gaGCUUGUGCUGCUga-------AGUACuuCCa -5'
22610 5' -48.6 NC_005091.1 + 13499 0.68 0.944694
Target:  5'- aUCGAACGgcuCGACGGC-UCG-GGAGGa -3'
miRNA:   3'- gAGCUUGU---GCUGCUGaAGUaCUUCCa -5'
22610 5' -48.6 NC_005091.1 + 19960 0.68 0.934154
Target:  5'- uUCGAaggccGCACcgugguucaguGGCGGCUUCAUGAAGu- -3'
miRNA:   3'- gAGCU-----UGUG-----------CUGCUGAAGUACUUCca -5'
22610 5' -48.6 NC_005091.1 + 41534 0.68 0.928438
Target:  5'- uUCGAAUggGACGACUUCcUGAucuauaaccaacAGGa -3'
miRNA:   3'- gAGCUUGugCUGCUGAAGuACU------------UCCa -5'
22610 5' -48.6 NC_005091.1 + 40621 0.69 0.902602
Target:  5'- aCUCGGcgGCGGCGACcuaagcCAUGAGGGc -3'
miRNA:   3'- -GAGCUugUGCUGCUGaa----GUACUUCCa -5'
22610 5' -48.6 NC_005091.1 + 1030 0.7 0.887927
Target:  5'- uUCcGGCACGACGGCUUCcgGGucGUa -3'
miRNA:   3'- gAGcUUGUGCUGCUGAAGuaCUucCA- -5'
22610 5' -48.6 NC_005091.1 + 2180 0.71 0.846439
Target:  5'- aCUCGAAgaagcgUGCGACGACaUCGaGAAGGg -3'
miRNA:   3'- -GAGCUU------GUGCUGCUGaAGUaCUUCCa -5'
22610 5' -48.6 NC_005091.1 + 1819 0.71 0.828084
Target:  5'- uUCGAACuuauCGGCGAUgucgUCGUGAAGa- -3'
miRNA:   3'- gAGCUUGu---GCUGCUGa---AGUACUUCca -5'
22610 5' -48.6 NC_005091.1 + 33236 1.08 0.006949
Target:  5'- gCUCGAACACGACGACUUCAUGAAGGUc -3'
miRNA:   3'- -GAGCUUGUGCUGCUGAAGUACUUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.