miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22611 3' -54 NC_005091.1 + 35230 0.66 0.82898
Target:  5'- cGCCagcgCGGCGGcGAUUUUCGcGAGAu- -3'
miRNA:   3'- -CGGa---GCCGCCuCUGAAGGCuUUCUcg -5'
22611 3' -54 NC_005091.1 + 46828 0.66 0.819868
Target:  5'- uUCUCGGCGGucGugU-CCGGGAcGAcGCg -3'
miRNA:   3'- cGGAGCCGCCu-CugAaGGCUUU-CU-CG- -5'
22611 3' -54 NC_005091.1 + 40621 0.66 0.801065
Target:  5'- -aCUCGGCGGcGGCgaccuaagCCauGAGGGCa -3'
miRNA:   3'- cgGAGCCGCCuCUGaa------GGcuUUCUCG- -5'
22611 3' -54 NC_005091.1 + 29612 0.66 0.791395
Target:  5'- aUCUCGGUGcGGGCgagCGGGAGGGCc -3'
miRNA:   3'- cGGAGCCGCcUCUGaagGCUUUCUCG- -5'
22611 3' -54 NC_005091.1 + 27425 0.66 0.791395
Target:  5'- --aUCGGCuGGGGGCgcUCCGggGGAu- -3'
miRNA:   3'- cggAGCCG-CCUCUGa-AGGCuuUCUcg -5'
22611 3' -54 NC_005091.1 + 10923 0.67 0.781559
Target:  5'- aGCCcCGGCGGAaAC--CCGucGGGGCc -3'
miRNA:   3'- -CGGaGCCGCCUcUGaaGGCuuUCUCG- -5'
22611 3' -54 NC_005091.1 + 54470 0.67 0.751173
Target:  5'- cCCUUGGuCGGAGuACgaguaUCCGAAcaAGCg -3'
miRNA:   3'- cGGAGCC-GCCUC-UGa----AGGCUUucUCG- -5'
22611 3' -54 NC_005091.1 + 46225 0.67 0.748069
Target:  5'- gGCaCgagUGGuCGGAGACggCCGAcaacuacgacgcgaAGGAGCu -3'
miRNA:   3'- -CG-Ga--GCC-GCCUCUGaaGGCU--------------UUCUCG- -5'
22611 3' -54 NC_005091.1 + 17570 0.67 0.730294
Target:  5'- aCUUCGGCGcAGACccgUCCGAGuucAGCg -3'
miRNA:   3'- cGGAGCCGCcUCUGa--AGGCUUuc-UCG- -5'
22611 3' -54 NC_005091.1 + 17002 0.68 0.709024
Target:  5'- aUCUCGGCGucugguGGGGCUgggCgGAcGGAGCg -3'
miRNA:   3'- cGGAGCCGC------CUCUGAa--GgCUuUCUCG- -5'
22611 3' -54 NC_005091.1 + 19072 0.71 0.503581
Target:  5'- aGCUguUCGGCGGGGACaa--GAAGGAGg -3'
miRNA:   3'- -CGG--AGCCGCCUCUGaaggCUUUCUCg -5'
22611 3' -54 NC_005091.1 + 25464 0.72 0.458914
Target:  5'- aGCCUCGGCGGccugcauauuauuGACggCCauuGGGAGCu -3'
miRNA:   3'- -CGGAGCCGCCu------------CUGaaGGcu-UUCUCG- -5'
22611 3' -54 NC_005091.1 + 33537 1.14 0.000711
Target:  5'- cGCCUCGGCGGAGACUUCCGAAAGAGCu -3'
miRNA:   3'- -CGGAGCCGCCUCUGAAGGCUUUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.