miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22612 3' -48.8 NC_005091.1 + 26668 0.66 0.979286
Target:  5'- gGCGGcGGCCGGGacuUCGAaCGACUcacccagcgcgucgcGAAGGc -3'
miRNA:   3'- -CGUU-CCGGUCU---AGCUaGUUGA---------------CUUCC- -5'
22612 3' -48.8 NC_005091.1 + 57826 0.67 0.966003
Target:  5'- cGCGAcGGCgCAGGUCGAgcagCAAUcGgcGGu -3'
miRNA:   3'- -CGUU-CCG-GUCUAGCUa---GUUGaCuuCC- -5'
22612 3' -48.8 NC_005091.1 + 432 0.67 0.966003
Target:  5'- cGCGAcGGCgCAGGUCGAgcagCAAUcGgcGGu -3'
miRNA:   3'- -CGUU-CCG-GUCUAGCUa---GUUGaCuuCC- -5'
22612 3' -48.8 NC_005091.1 + 56131 0.67 0.962297
Target:  5'- cGCAAGGCUAGcGUCGAacUCgGGCUGccGa -3'
miRNA:   3'- -CGUUCCGGUC-UAGCU--AG-UUGACuuCc -5'
22612 3' -48.8 NC_005091.1 + 6442 0.67 0.95832
Target:  5'- cCGAGGgCAGcgUGcgCGcugcGCUGAAGGa -3'
miRNA:   3'- cGUUCCgGUCuaGCuaGU----UGACUUCC- -5'
22612 3' -48.8 NC_005091.1 + 31065 0.68 0.944694
Target:  5'- cGCAgcgugggaucAGGCCAcGUcCGAUCcGCUGggGa -3'
miRNA:   3'- -CGU----------UCCGGUcUA-GCUAGuUGACuuCc -5'
22612 3' -48.8 NC_005091.1 + 25723 0.68 0.939572
Target:  5'- uGCGcGGCCAGcucggCGAUCGGCUGc--- -3'
miRNA:   3'- -CGUuCCGGUCua---GCUAGUUGACuucc -5'
22612 3' -48.8 NC_005091.1 + 36485 0.68 0.936356
Target:  5'- uGCGGcGGCCGGAUCGAagcggaUCAGCgcaacgaucucgaccUGuGGGg -3'
miRNA:   3'- -CGUU-CCGGUCUAGCU------AGUUG---------------ACuUCC- -5'
22612 3' -48.8 NC_005091.1 + 48898 0.68 0.928438
Target:  5'- uGCGAuGGCCGGGUC---UAGCUGGgcGGGa -3'
miRNA:   3'- -CGUU-CCGGUCUAGcuaGUUGACU--UCC- -5'
22612 3' -48.8 NC_005091.1 + 38168 0.68 0.922424
Target:  5'- uGCcGGGCgAGAcgacCGAUgAGCUGAAGa -3'
miRNA:   3'- -CGuUCCGgUCUa---GCUAgUUGACUUCc -5'
22612 3' -48.8 NC_005091.1 + 34957 0.69 0.916113
Target:  5'- uCAuGGUCAGAa-GGUgAACUGAAGGg -3'
miRNA:   3'- cGUuCCGGUCUagCUAgUUGACUUCC- -5'
22612 3' -48.8 NC_005091.1 + 33704 0.69 0.902602
Target:  5'- cGCcGGGCCAGAcgCGGgaccuguucuaUCAGCcgcugaUGAAGGa -3'
miRNA:   3'- -CGuUCCGGUCUa-GCU-----------AGUUG------ACUUCC- -5'
22612 3' -48.8 NC_005091.1 + 1247 0.71 0.837378
Target:  5'- gGCuGGGCCGGAugUCGGaaGGCUGggGc -3'
miRNA:   3'- -CGuUCCGGUCU--AGCUagUUGACuuCc -5'
22612 3' -48.8 NC_005091.1 + 29825 0.73 0.701482
Target:  5'- aCGAGGaCCAGAaugagcaUCGAaaUCGucGCUGAAGGg -3'
miRNA:   3'- cGUUCC-GGUCU-------AGCU--AGU--UGACUUCC- -5'
22612 3' -48.8 NC_005091.1 + 28952 0.77 0.489284
Target:  5'- uGCAGGGCUGGGUCaaccauGCUGAAGGg -3'
miRNA:   3'- -CGUUCCGGUCUAGcuagu-UGACUUCC- -5'
22612 3' -48.8 NC_005091.1 + 33626 1.15 0.002139
Target:  5'- cGCAAGGCCAGAUCGAUCAACUGAAGGa -3'
miRNA:   3'- -CGUUCCGGUCUAGCUAGUUGACUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.