miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22613 3' -56.1 NC_005091.1 + 27355 0.66 0.70837
Target:  5'- cCGUCGCGGUucgaGAagugguaucucggacUGCGGCGCgacgccagCCUCu -3'
miRNA:   3'- cGUAGCGCUA----CU---------------GCGCCGCGaa------GGAG- -5'
22613 3' -56.1 NC_005091.1 + 50235 0.66 0.693389
Target:  5'- gGCcgCGUGAUGAUgaaggGCGGCcGgUUCCa- -3'
miRNA:   3'- -CGuaGCGCUACUG-----CGCCG-CgAAGGag -5'
22613 3' -56.1 NC_005091.1 + 2308 0.66 0.693389
Target:  5'- cGCAUCGCGAcGACGCcgaaGGuCGCcugaaugCCaUCa -3'
miRNA:   3'- -CGUAGCGCUaCUGCG----CC-GCGaa-----GG-AG- -5'
22613 3' -56.1 NC_005091.1 + 52015 0.66 0.693389
Target:  5'- gGCGUCGCauuucGGgGCGaGCGUgacUUCCUCa -3'
miRNA:   3'- -CGUAGCGcua--CUgCGC-CGCG---AAGGAG- -5'
22613 3' -56.1 NC_005091.1 + 43630 0.66 0.682616
Target:  5'- cGCuucUCGCGAUGGCGCacagGCUUUCUg -3'
miRNA:   3'- -CGu--AGCGCUACUGCGccg-CGAAGGAg -5'
22613 3' -56.1 NC_005091.1 + 18913 0.66 0.681536
Target:  5'- aGCAUCGCGGccaGuCGCGGauucacuUGCUgggucgCCUCa -3'
miRNA:   3'- -CGUAGCGCUa--CuGCGCC-------GCGAa-----GGAG- -5'
22613 3' -56.1 NC_005091.1 + 45805 0.67 0.650056
Target:  5'- uGCAUCGgaaGAgcaguagccGGCGCGGCGCgcggCCg- -3'
miRNA:   3'- -CGUAGCg--CUa--------CUGCGCCGCGaa--GGag -5'
22613 3' -56.1 NC_005091.1 + 36344 0.67 0.650056
Target:  5'- gGCGUCGUGgcGGCGUucaucucguGGCGCaaaCUCg -3'
miRNA:   3'- -CGUAGCGCuaCUGCG---------CCGCGaagGAG- -5'
22613 3' -56.1 NC_005091.1 + 53166 0.67 0.639157
Target:  5'- cGCuguagCGCGcgGGCGCGaGC-CUUCCg- -3'
miRNA:   3'- -CGua---GCGCuaCUGCGC-CGcGAAGGag -5'
22613 3' -56.1 NC_005091.1 + 50122 0.67 0.639157
Target:  5'- uCGUUGCcGUacGGCGCGGCGCUagUUCa -3'
miRNA:   3'- cGUAGCGcUA--CUGCGCCGCGAagGAG- -5'
22613 3' -56.1 NC_005091.1 + 46817 0.67 0.617349
Target:  5'- cGUGUcCGgGAcGACGCGGC-CUUCCa- -3'
miRNA:   3'- -CGUA-GCgCUaCUGCGCCGcGAAGGag -5'
22613 3' -56.1 NC_005091.1 + 13312 0.67 0.617349
Target:  5'- uCGUUGCGcgGAuCGCGGCGCaauggUCUa- -3'
miRNA:   3'- cGUAGCGCuaCU-GCGCCGCGa----AGGag -5'
22613 3' -56.1 NC_005091.1 + 33703 0.67 0.60646
Target:  5'- -gGUCGCGA-GGCGauCGGCGCacaUCUUCu -3'
miRNA:   3'- cgUAGCGCUaCUGC--GCCGCGa--AGGAG- -5'
22613 3' -56.1 NC_005091.1 + 51582 0.68 0.584755
Target:  5'- uGCGUCGCG-UGACG-GGCGCg----- -3'
miRNA:   3'- -CGUAGCGCuACUGCgCCGCGaaggag -5'
22613 3' -56.1 NC_005091.1 + 12387 0.68 0.584755
Target:  5'- uGCAgcUCGUgGAUGAC-UGGCGCaaCCUCg -3'
miRNA:   3'- -CGU--AGCG-CUACUGcGCCGCGaaGGAG- -5'
22613 3' -56.1 NC_005091.1 + 31926 0.68 0.583673
Target:  5'- aUAUCGUGAcGACGCGGgcgaacguggcUGCUgccacggUCCUCg -3'
miRNA:   3'- cGUAGCGCUaCUGCGCC-----------GCGA-------AGGAG- -5'
22613 3' -56.1 NC_005091.1 + 50285 0.68 0.573957
Target:  5'- gGCGUCGCGAcacGCGCaaGGUGCaUCCg- -3'
miRNA:   3'- -CGUAGCGCUac-UGCG--CCGCGaAGGag -5'
22613 3' -56.1 NC_005091.1 + 52637 0.68 0.573957
Target:  5'- uGCGUCGCGccGAuccCGUGuGCGCcaUUCCUUc -3'
miRNA:   3'- -CGUAGCGCuaCU---GCGC-CGCG--AAGGAG- -5'
22613 3' -56.1 NC_005091.1 + 36744 0.68 0.541873
Target:  5'- --uUCGCGAUGACGCuGGC-CgaagUCCa- -3'
miRNA:   3'- cguAGCGCUACUGCG-CCGcGa---AGGag -5'
22613 3' -56.1 NC_005091.1 + 42666 0.68 0.531307
Target:  5'- aGCGUC-CGAgcguGCGCGGCGCggacaagcgUCUUCu -3'
miRNA:   3'- -CGUAGcGCUac--UGCGCCGCGa--------AGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.