miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22615 3' -54.1 NC_005091.1 + 50871 0.65 0.818798
Target:  5'- uGCAACgcgCGccgagcguugccaaGCugGCCCGCGaacugCGGCu -3'
miRNA:   3'- -CGUUGa--GC--------------UGugCGGGUGCgaa--GCUG- -5'
22615 3' -54.1 NC_005091.1 + 11466 0.66 0.812263
Target:  5'- cGCAGCgUGACGCgGCCgACGCccgGACu -3'
miRNA:   3'- -CGUUGaGCUGUG-CGGgUGCGaagCUG- -5'
22615 3' -54.1 NC_005091.1 + 3259 0.66 0.812263
Target:  5'- uGCGuUUUGcagUACGUCCgGCGCUUCGACu -3'
miRNA:   3'- -CGUuGAGCu--GUGCGGG-UGCGAAGCUG- -5'
22615 3' -54.1 NC_005091.1 + 18114 0.66 0.812263
Target:  5'- -gAGCUgCGGCACGCUgaucgagaaCACGUcggUCGGCg -3'
miRNA:   3'- cgUUGA-GCUGUGCGG---------GUGCGa--AGCUG- -5'
22615 3' -54.1 NC_005091.1 + 55794 0.66 0.802767
Target:  5'- uGCAACUgCGGCuGCGCCgACuGCUcgGGCa -3'
miRNA:   3'- -CGUUGA-GCUG-UGCGGgUG-CGAagCUG- -5'
22615 3' -54.1 NC_005091.1 + 56798 0.66 0.802767
Target:  5'- gGCAACgcgauggCGugGCuGCaCCGCGCagccagCGACg -3'
miRNA:   3'- -CGUUGa------GCugUG-CG-GGUGCGaa----GCUG- -5'
22615 3' -54.1 NC_005091.1 + 57858 0.66 0.802767
Target:  5'- cGCcGCUUGGC-CGCCuuCACGaCggcgUCGACg -3'
miRNA:   3'- -CGuUGAGCUGuGCGG--GUGC-Ga---AGCUG- -5'
22615 3' -54.1 NC_005091.1 + 464 0.66 0.802767
Target:  5'- cGCcGCUUGGC-CGCCuuCACGaCggcgUCGACg -3'
miRNA:   3'- -CGuUGAGCUGuGCGG--GUGC-Ga---AGCUG- -5'
22615 3' -54.1 NC_005091.1 + 57393 0.66 0.802767
Target:  5'- uGCuuCUUGACGCGCa---GCUUCGGu -3'
miRNA:   3'- -CGuuGAGCUGUGCGggugCGAAGCUg -5'
22615 3' -54.1 NC_005091.1 + 11391 0.66 0.793092
Target:  5'- uCGGCcgCGuCACG-CUGCGCUUCGGCc -3'
miRNA:   3'- cGUUGa-GCuGUGCgGGUGCGAAGCUG- -5'
22615 3' -54.1 NC_005091.1 + 47210 0.66 0.793092
Target:  5'- -aAGCU--GCACGgCCAcaauCGCUUCGACg -3'
miRNA:   3'- cgUUGAgcUGUGCgGGU----GCGAAGCUG- -5'
22615 3' -54.1 NC_005091.1 + 39466 0.66 0.793092
Target:  5'- cGCuGCUCGAUcggcuACuCUCGCGCUUCG-Ca -3'
miRNA:   3'- -CGuUGAGCUG-----UGcGGGUGCGAAGCuG- -5'
22615 3' -54.1 NC_005091.1 + 17330 0.66 0.792115
Target:  5'- cGCAGCaaGACAaacugguCGCCCACGaa--GACg -3'
miRNA:   3'- -CGUUGagCUGU-------GCGGGUGCgaagCUG- -5'
22615 3' -54.1 NC_005091.1 + 21195 0.66 0.78325
Target:  5'- --cGCUCGACGCGCUCGUGa-UCGAUu -3'
miRNA:   3'- cguUGAGCUGUGCGGGUGCgaAGCUG- -5'
22615 3' -54.1 NC_005091.1 + 50863 0.66 0.78325
Target:  5'- gGCAGugCGAaaugcaauCGCCCAUGCUUCGcGCg -3'
miRNA:   3'- -CGUUgaGCUgu------GCGGGUGCGAAGC-UG- -5'
22615 3' -54.1 NC_005091.1 + 28768 0.66 0.782256
Target:  5'- cGUGugUCG-UGCGCCCGCagaagguGCUUCGGg -3'
miRNA:   3'- -CGUugAGCuGUGCGGGUG-------CGAAGCUg -5'
22615 3' -54.1 NC_005091.1 + 26719 0.66 0.77325
Target:  5'- cCGACUCGAUcgacCGCCCGUGaacUCGACa -3'
miRNA:   3'- cGUUGAGCUGu---GCGGGUGCga-AGCUG- -5'
22615 3' -54.1 NC_005091.1 + 32026 0.66 0.77325
Target:  5'- uGCGGCcCGu--CGCCUugGCgagCGACg -3'
miRNA:   3'- -CGUUGaGCuguGCGGGugCGaa-GCUG- -5'
22615 3' -54.1 NC_005091.1 + 25212 0.66 0.772242
Target:  5'- gGCGGCcgcugcaccggggUCGAUGCaGCCgGCGCgUCGAUg -3'
miRNA:   3'- -CGUUG-------------AGCUGUG-CGGgUGCGaAGCUG- -5'
22615 3' -54.1 NC_005091.1 + 20344 0.67 0.763104
Target:  5'- cGCAaaGCggCGACGCGUcggccgauucgaUCACGC-UCGACu -3'
miRNA:   3'- -CGU--UGa-GCUGUGCG------------GGUGCGaAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.