miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22615 5' -60 NC_005091.1 + 16016 0.66 0.477472
Target:  5'- uCAGgcCGAcaAGCGUcgugcugccgccGGCCGGCgGCAc -3'
miRNA:   3'- -GUCauGCUugUCGCG------------CCGGCCGgCGU- -5'
22615 5' -60 NC_005091.1 + 55400 0.66 0.477472
Target:  5'- gAGcGCGAGCA-CGCGGgCGGCaaaGCu -3'
miRNA:   3'- gUCaUGCUUGUcGCGCCgGCCGg--CGu -5'
22615 5' -60 NC_005091.1 + 26304 0.66 0.457039
Target:  5'- gCAGccUGCGcAGCAGCcucucugGCGGCCugcucgcgcccGGCCGCu -3'
miRNA:   3'- -GUC--AUGC-UUGUCG-------CGCCGG-----------CCGGCGu -5'
22615 5' -60 NC_005091.1 + 10862 0.66 0.457039
Target:  5'- gCAGUugAUGAucgaccucgggaaACAGCucgacccgGCGGCCGGCCuGUAg -3'
miRNA:   3'- -GUCA--UGCU-------------UGUCG--------CGCCGGCCGG-CGU- -5'
22615 5' -60 NC_005091.1 + 35102 0.66 0.448426
Target:  5'- uGGUccACGAucacGCGGgccgaGCGGCCGGUCaGCAg -3'
miRNA:   3'- gUCA--UGCU----UGUCg----CGCCGGCCGG-CGU- -5'
22615 5' -60 NC_005091.1 + 38401 0.66 0.448426
Target:  5'- cCAGUACGcuACgAGCaGCGGCUcGCCGUu -3'
miRNA:   3'- -GUCAUGCu-UG-UCG-CGCCGGcCGGCGu -5'
22615 5' -60 NC_005091.1 + 26111 0.67 0.429614
Target:  5'- gCGGU-CGAGCAGCGaaaCGGUCuucGCCGCu -3'
miRNA:   3'- -GUCAuGCUUGUCGC---GCCGGc--CGGCGu -5'
22615 5' -60 NC_005091.1 + 6020 0.67 0.429614
Target:  5'- -uGUACGAggGCGGCGCGGacguuCGGgCGUu -3'
miRNA:   3'- guCAUGCU--UGUCGCGCCg----GCCgGCGu -5'
22615 5' -60 NC_005091.1 + 46190 0.67 0.429614
Target:  5'- cCAGUACGAcggccACgAGCGCGGCCucgaacucuGGCaCGa- -3'
miRNA:   3'- -GUCAUGCU-----UG-UCGCGCCGG---------CCG-GCgu -5'
22615 5' -60 NC_005091.1 + 13082 0.67 0.420384
Target:  5'- --cUACGAGC--CGUGGCUGGCgGCAg -3'
miRNA:   3'- gucAUGCUUGucGCGCCGGCCGgCGU- -5'
22615 5' -60 NC_005091.1 + 48792 0.67 0.420384
Target:  5'- -cGUGuCGcucguGCAGUGCcgcauuGGCCGGCCGUg -3'
miRNA:   3'- guCAU-GCu----UGUCGCG------CCGGCCGGCGu -5'
22615 5' -60 NC_005091.1 + 50508 0.67 0.420384
Target:  5'- -cGUGCGAACGGCGaaGUuuucaCGGUCGCu -3'
miRNA:   3'- guCAUGCUUGUCGCgcCG-----GCCGGCGu -5'
22615 5' -60 NC_005091.1 + 18910 0.67 0.420384
Target:  5'- ----cCGAGCAuCGCGGCCaGUCGCGg -3'
miRNA:   3'- gucauGCUUGUcGCGCCGGcCGGCGU- -5'
22615 5' -60 NC_005091.1 + 4304 0.67 0.420384
Target:  5'- -cGUACGGcACGGUGaCGGgCGcGCCGCc -3'
miRNA:   3'- guCAUGCU-UGUCGC-GCCgGC-CGGCGu -5'
22615 5' -60 NC_005091.1 + 3017 0.67 0.414903
Target:  5'- -cGUGCGGGCAGCGCccagcgcauuGUcaucaaacccccggaCGGCCGCAa -3'
miRNA:   3'- guCAUGCUUGUCGCGc---------CG---------------GCCGGCGU- -5'
22615 5' -60 NC_005091.1 + 25635 0.67 0.411274
Target:  5'- ---gGCGGGCAGCcgaucgcCGaGCUGGCCGCGc -3'
miRNA:   3'- gucaUGCUUGUCGc------GC-CGGCCGGCGU- -5'
22615 5' -60 NC_005091.1 + 52669 0.67 0.402288
Target:  5'- aGGUACGAcacgaccagACgGGCGCGcacGCCGGCCaguGCGa -3'
miRNA:   3'- gUCAUGCU---------UG-UCGCGC---CGGCCGG---CGU- -5'
22615 5' -60 NC_005091.1 + 3728 0.67 0.393428
Target:  5'- -uGUGCagGAACGGCaGCaGGUCGGCCGg- -3'
miRNA:   3'- guCAUG--CUUGUCG-CG-CCGGCCGGCgu -5'
22615 5' -60 NC_005091.1 + 25741 0.68 0.384695
Target:  5'- aGGUGCaggcggaaGAACuGCGCGGCCagcucggcgaucGGCUGCc -3'
miRNA:   3'- gUCAUG--------CUUGuCGCGCCGG------------CCGGCGu -5'
22615 5' -60 NC_005091.1 + 28364 0.68 0.379518
Target:  5'- gCAGcaagGCGAAggucacgcaagccgcCAGCGCGucGCCGGuuGCAc -3'
miRNA:   3'- -GUCa---UGCUU---------------GUCGCGC--CGGCCggCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.