miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22616 3' -55.7 NC_005091.1 + 53011 0.66 0.751438
Target:  5'- cACGUCAgauagAUGUCuugaCCCaGCGCGGCa -3'
miRNA:   3'- -UGUAGU-----UGCAGuag-GGGcCGCGCUGg -5'
22616 3' -55.7 NC_005091.1 + 4655 0.66 0.751438
Target:  5'- aGCAUCGcgcagcuccgcGCGUCGUUUUgGGCcGgGGCCg -3'
miRNA:   3'- -UGUAGU-----------UGCAGUAGGGgCCG-CgCUGG- -5'
22616 3' -55.7 NC_005091.1 + 16008 0.66 0.750418
Target:  5'- uACAUCGgucaggccgacaaGCGUCGUgcugCCgCCGGCcgGCGGCa -3'
miRNA:   3'- -UGUAGU-------------UGCAGUA----GG-GGCCG--CGCUGg -5'
22616 3' -55.7 NC_005091.1 + 38246 0.66 0.741188
Target:  5'- uCAUCGGuCGUC-UCgCCCGGCaG-GGCCa -3'
miRNA:   3'- uGUAGUU-GCAGuAG-GGGCCG-CgCUGG- -5'
22616 3' -55.7 NC_005091.1 + 49696 0.66 0.727705
Target:  5'- gGCAUCGcuCGUCAUCggugcguugaucguCCCGGCGau-CCu -3'
miRNA:   3'- -UGUAGUu-GCAGUAG--------------GGGCCGCgcuGG- -5'
22616 3' -55.7 NC_005091.1 + 47098 0.66 0.720379
Target:  5'- -gAUgGGCGUCAUCCUCGGUcCGGa- -3'
miRNA:   3'- ugUAgUUGCAGUAGGGGCCGcGCUgg -5'
22616 3' -55.7 NC_005091.1 + 4798 0.66 0.720379
Target:  5'- gACAUCGGucguggauucucUGUUcgCgCUCGGCGCGGCg -3'
miRNA:   3'- -UGUAGUU------------GCAGuaG-GGGCCGCGCUGg -5'
22616 3' -55.7 NC_005091.1 + 46826 0.66 0.720379
Target:  5'- --cUCGGCgGUCGUgUCCGGgacgaCGCGGCCu -3'
miRNA:   3'- uguAGUUG-CAGUAgGGGCC-----GCGCUGG- -5'
22616 3' -55.7 NC_005091.1 + 10445 0.66 0.720379
Target:  5'- gUAUCcGCGcCGUCCUCGaugucgggcGCGCGACa -3'
miRNA:   3'- uGUAGuUGCaGUAGGGGC---------CGCGCUGg -5'
22616 3' -55.7 NC_005091.1 + 15779 0.66 0.720379
Target:  5'- cGCAUgcCGACGc---CCCCGGUuugcGCGGCCg -3'
miRNA:   3'- -UGUA--GUUGCaguaGGGGCCG----CGCUGG- -5'
22616 3' -55.7 NC_005091.1 + 51785 0.66 0.699231
Target:  5'- cGCAUCcGCGaUC-UUCCCGGCguccggGCGugCg -3'
miRNA:   3'- -UGUAGuUGC-AGuAGGGGCCG------CGCugG- -5'
22616 3' -55.7 NC_005091.1 + 51438 0.66 0.699231
Target:  5'- cGCG-CAGCGUCGacagCCCCGGuCGUcGCUu -3'
miRNA:   3'- -UGUaGUUGCAGUa---GGGGCC-GCGcUGG- -5'
22616 3' -55.7 NC_005091.1 + 16888 0.66 0.699231
Target:  5'- --uUCGugGUCGUCCCCcaGCcCGACg -3'
miRNA:   3'- uguAGUugCAGUAGGGGc-CGcGCUGg -5'
22616 3' -55.7 NC_005091.1 + 1912 0.66 0.699231
Target:  5'- cAUAUC-GCGUUgaagGUCCUCGGCGagaaGAUCg -3'
miRNA:   3'- -UGUAGuUGCAG----UAGGGGCCGCg---CUGG- -5'
22616 3' -55.7 NC_005091.1 + 21633 0.67 0.679979
Target:  5'- gACAUCAugGUCGccagcggcuacaCCCCGGaccaagccgaggcgaCGCGGCa -3'
miRNA:   3'- -UGUAGUugCAGUa-----------GGGGCC---------------GCGCUGg -5'
22616 3' -55.7 NC_005091.1 + 35973 0.67 0.67783
Target:  5'- gACAUaGAUGUCGUacggauugCCCGGCGCaauGCCg -3'
miRNA:   3'- -UGUAgUUGCAGUAg-------GGGCCGCGc--UGG- -5'
22616 3' -55.7 NC_005091.1 + 12201 0.67 0.67783
Target:  5'- gGCAUCAggacccacacAUGgagCAggguaUCCGGUGCGACCu -3'
miRNA:   3'- -UGUAGU----------UGCa--GUag---GGGCCGCGCUGG- -5'
22616 3' -55.7 NC_005091.1 + 1132 0.67 0.667061
Target:  5'- gGCAaCucCGUCAUCCCCGaaGCGAa- -3'
miRNA:   3'- -UGUaGuuGCAGUAGGGGCcgCGCUgg -5'
22616 3' -55.7 NC_005091.1 + 18561 0.67 0.65626
Target:  5'- cGCAUCGAgGUCGUCCUguCGGUuCcACCg -3'
miRNA:   3'- -UGUAGUUgCAGUAGGG--GCCGcGcUGG- -5'
22616 3' -55.7 NC_005091.1 + 34041 0.68 0.634604
Target:  5'- uACGUCGGCGgugcgaacaaCAUCCagaucgaCGGCGCGAa- -3'
miRNA:   3'- -UGUAGUUGCa---------GUAGGg------GCCGCGCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.