miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22620 5' -51.7 NC_005091.1 + 32326 0.66 0.910737
Target:  5'- cGCUCGCGguCGGCcUUGAUAGCAGcacggcGUUCg -3'
miRNA:   3'- -CGAGCGC--GCUGuGGCUGUUGUU------CAAG- -5'
22620 5' -51.7 NC_005091.1 + 4818 0.66 0.910737
Target:  5'- uGUUCGCGCucGGCGCggCGGCAACGG--UCa -3'
miRNA:   3'- -CGAGCGCG--CUGUG--GCUGUUGUUcaAG- -5'
22620 5' -51.7 NC_005091.1 + 36778 0.66 0.910737
Target:  5'- cCUCGCGuCGAaGCgGACcACGAcGUUCg -3'
miRNA:   3'- cGAGCGC-GCUgUGgCUGuUGUU-CAAG- -5'
22620 5' -51.7 NC_005091.1 + 38962 0.66 0.910737
Target:  5'- uCUCacCGCGACGCCGGCugcCGAGa-- -3'
miRNA:   3'- cGAGc-GCGCUGUGGCUGuu-GUUCaag -5'
22620 5' -51.7 NC_005091.1 + 51556 0.66 0.910737
Target:  5'- uGCgaucCGCGCGGCAUCGcCAAguGGg-- -3'
miRNA:   3'- -CGa---GCGCGCUGUGGCuGUUguUCaag -5'
22620 5' -51.7 NC_005091.1 + 52095 0.66 0.910737
Target:  5'- cGCUCGCcccgaaauGCGACGCCG-UAGCGc---- -3'
miRNA:   3'- -CGAGCG--------CGCUGUGGCuGUUGUucaag -5'
22620 5' -51.7 NC_005091.1 + 19795 0.66 0.910737
Target:  5'- uGCUCGCGUauCAuCCGucuguaAgAACAAGUUCg -3'
miRNA:   3'- -CGAGCGCGcuGU-GGC------UgUUGUUCAAG- -5'
22620 5' -51.7 NC_005091.1 + 36214 0.66 0.908753
Target:  5'- cGCUCGUagucuucuucggccGUGAUguaGuuGGCGACGAGUUUg -3'
miRNA:   3'- -CGAGCG--------------CGCUG---UggCUGUUGUUCAAG- -5'
22620 5' -51.7 NC_005091.1 + 51200 0.66 0.904025
Target:  5'- ---gGCGCGACGgCGACGAUuuAGGgUCg -3'
miRNA:   3'- cgagCGCGCUGUgGCUGUUG--UUCaAG- -5'
22620 5' -51.7 NC_005091.1 + 53240 0.66 0.903338
Target:  5'- cGCcCGCGCGcuacagcggaaucACGCgaGACAGCGcgccGGUUCg -3'
miRNA:   3'- -CGaGCGCGC-------------UGUGg-CUGUUGU----UCAAG- -5'
22620 5' -51.7 NC_005091.1 + 25598 0.66 0.897033
Target:  5'- gGCuUCGCGCaACAgcUCGGCGAUGAGUa- -3'
miRNA:   3'- -CG-AGCGCGcUGU--GGCUGUUGUUCAag -5'
22620 5' -51.7 NC_005091.1 + 49397 0.66 0.897033
Target:  5'- cGCUgaacaCGCGCGGCACUcuUAGCAAuUUCg -3'
miRNA:   3'- -CGA-----GCGCGCUGUGGcuGUUGUUcAAG- -5'
22620 5' -51.7 NC_005091.1 + 25472 0.66 0.897033
Target:  5'- gGCuUCGCG-GACG-CGugGAcCAAGUUCg -3'
miRNA:   3'- -CG-AGCGCgCUGUgGCugUU-GUUCAAG- -5'
22620 5' -51.7 NC_005091.1 + 6706 0.66 0.889764
Target:  5'- cGCUCGgGCaugaACGCCGGCAGCc----- -3'
miRNA:   3'- -CGAGCgCGc---UGUGGCUGUUGuucaag -5'
22620 5' -51.7 NC_005091.1 + 43183 0.66 0.889764
Target:  5'- cGCUCGuCGCGaaaGCGCCGG--GCAAGc-- -3'
miRNA:   3'- -CGAGC-GCGC---UGUGGCUguUGUUCaag -5'
22620 5' -51.7 NC_005091.1 + 31221 0.66 0.889764
Target:  5'- uGCUCGC-CGGCA-CGACGcuugaGCGuacGGUUCg -3'
miRNA:   3'- -CGAGCGcGCUGUgGCUGU-----UGU---UCAAG- -5'
22620 5' -51.7 NC_005091.1 + 10355 0.66 0.882224
Target:  5'- -gUCGCGCG-C-CCGACAuCGAGgaCg -3'
miRNA:   3'- cgAGCGCGCuGuGGCUGUuGUUCaaG- -5'
22620 5' -51.7 NC_005091.1 + 1267 0.66 0.882224
Target:  5'- gGCUgGgGCGaAUACCGGCAGgu-GUUCu -3'
miRNA:   3'- -CGAgCgCGC-UGUGGCUGUUguuCAAG- -5'
22620 5' -51.7 NC_005091.1 + 32116 0.66 0.882224
Target:  5'- uGCUCGCGuCGcuCGCCaaGGCGACGGGc-- -3'
miRNA:   3'- -CGAGCGC-GCu-GUGG--CUGUUGUUCaag -5'
22620 5' -51.7 NC_005091.1 + 50388 0.66 0.882224
Target:  5'- aGCgUCGCGCGAUGCUGu---CAAGaUCg -3'
miRNA:   3'- -CG-AGCGCGCUGUGGCuguuGUUCaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.