miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22621 5' -52.7 NC_005091.1 + 20058 0.66 0.869488
Target:  5'- cGACA---UCU---GCUGCCCGACGAu -3'
miRNA:   3'- cCUGUacuAGGacaUGACGGGCUGCU- -5'
22621 5' -52.7 NC_005091.1 + 56797 0.67 0.835533
Target:  5'- -cAUGUGAacaUCUUucgGCUGCCCGGCGAu -3'
miRNA:   3'- ccUGUACU---AGGAca-UGACGGGCUGCU- -5'
22621 5' -52.7 NC_005091.1 + 31535 0.68 0.76817
Target:  5'- uGGCGUGAUUCaGUcCgGCCCGGCGc -3'
miRNA:   3'- cCUGUACUAGGaCAuGaCGGGCUGCu -5'
22621 5' -52.7 NC_005091.1 + 26643 0.68 0.757888
Target:  5'- cGGGCGgucGAUCgaGUcgGCgGCCCGGCGu -3'
miRNA:   3'- -CCUGUa--CUAGgaCA--UGaCGGGCUGCu -5'
22621 5' -52.7 NC_005091.1 + 4850 0.69 0.704758
Target:  5'- cGGGCGaag-CCguaUGUGCUGCCgGACGGg -3'
miRNA:   3'- -CCUGUacuaGG---ACAUGACGGgCUGCU- -5'
22621 5' -52.7 NC_005091.1 + 39284 0.72 0.539893
Target:  5'- gGGACAUGuacgCCgUGUGCUGCCagaGCGGa -3'
miRNA:   3'- -CCUGUACua--GG-ACAUGACGGgc-UGCU- -5'
22621 5' -52.7 NC_005091.1 + 4193 0.74 0.427226
Target:  5'- cGGAUGUccaaGGUCCUGUcguUGCCCGGCGGc -3'
miRNA:   3'- -CCUGUA----CUAGGACAug-ACGGGCUGCU- -5'
22621 5' -52.7 NC_005091.1 + 37055 1.12 0.001427
Target:  5'- uGGACAUGAUCCUGUACUGCCCGACGAa -3'
miRNA:   3'- -CCUGUACUAGGACAUGACGGGCUGCU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.