miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22622 5' -52.3 NC_005091.1 + 26240 0.65 0.879532
Target:  5'- cUGaGCGGCAgcccgaauacgagCGAGGCGaGCAUCAAa- -3'
miRNA:   3'- -AC-CGCUGUa------------GCUCCGUgUGUAGUUcu -5'
22622 5' -52.3 NC_005091.1 + 18790 0.66 0.874804
Target:  5'- aGGCGAUgaacccGGCGCACAUCAu-- -3'
miRNA:   3'- aCCGCUGuagcu-CCGUGUGUAGUucu -5'
22622 5' -52.3 NC_005091.1 + 4040 0.66 0.874804
Target:  5'- aGGCGGggcguuucucacCAUCGuGGCGgcCGCuUCGAGAg -3'
miRNA:   3'- aCCGCU------------GUAGCuCCGU--GUGuAGUUCU- -5'
22622 5' -52.3 NC_005091.1 + 41967 0.66 0.869981
Target:  5'- -cGCGAgGUCGAgcagcacgucgccguGGCACGCuUCAGGu -3'
miRNA:   3'- acCGCUgUAGCU---------------CCGUGUGuAGUUCu -5'
22622 5' -52.3 NC_005091.1 + 28793 0.66 0.866714
Target:  5'- aUGGCGAuCAguucgcCGAGGCGCACcugCAc-- -3'
miRNA:   3'- -ACCGCU-GUa-----GCUCCGUGUGua-GUucu -5'
22622 5' -52.3 NC_005091.1 + 16657 0.66 0.858369
Target:  5'- cGaGCGACGgcgUGGGGUACGCAcggaAAGAc -3'
miRNA:   3'- aC-CGCUGUa--GCUCCGUGUGUag--UUCU- -5'
22622 5' -52.3 NC_005091.1 + 47738 0.66 0.85752
Target:  5'- cUGGCGuucaggaGCGUCGAGGaa-ACGUCGAu- -3'
miRNA:   3'- -ACCGC-------UGUAGCUCCgugUGUAGUUcu -5'
22622 5' -52.3 NC_005091.1 + 34046 0.66 0.840945
Target:  5'- aGGCGuACGUCGGcGGUGCgaacaACAUCcAGAu -3'
miRNA:   3'- aCCGC-UGUAGCU-CCGUG-----UGUAGuUCU- -5'
22622 5' -52.3 NC_005091.1 + 8667 0.66 0.840945
Target:  5'- cGcGCaGACAUcCGGGGCACGCuguUCAGu- -3'
miRNA:   3'- aC-CG-CUGUA-GCUCCGUGUGu--AGUUcu -5'
22622 5' -52.3 NC_005091.1 + 48611 0.66 0.840049
Target:  5'- gGGCGGcCGUCGGGGUcccauccggcgagGCGCGaauggCGGGAg -3'
miRNA:   3'- aCCGCU-GUAGCUCCG-------------UGUGUa----GUUCU- -5'
22622 5' -52.3 NC_005091.1 + 27797 0.67 0.831884
Target:  5'- cGGcCGGcCGUCGAGGUACACGc----- -3'
miRNA:   3'- aCC-GCU-GUAGCUCCGUGUGUaguucu -5'
22622 5' -52.3 NC_005091.1 + 40049 0.67 0.831884
Target:  5'- cGGCGACgcGUCGAaggGGCuGCAUGUCcuGAa -3'
miRNA:   3'- aCCGCUG--UAGCU---CCG-UGUGUAGuuCU- -5'
22622 5' -52.3 NC_005091.1 + 20903 0.67 0.831884
Target:  5'- aGGCGACGUaaugGGGGCGaACGUUuGGGg -3'
miRNA:   3'- aCCGCUGUAg---CUCCGUgUGUAGuUCU- -5'
22622 5' -52.3 NC_005091.1 + 1383 0.67 0.831884
Target:  5'- cGGCGugAUCGAcuGCuugccGCACGUCGcgaAGAa -3'
miRNA:   3'- aCCGCugUAGCUc-CG-----UGUGUAGU---UCU- -5'
22622 5' -52.3 NC_005091.1 + 25022 0.67 0.828197
Target:  5'- cGGCGGCcgaaucgaucuaCGAGGCAUggaucaACGUCAAGu -3'
miRNA:   3'- aCCGCUGua----------GCUCCGUG------UGUAGUUCu -5'
22622 5' -52.3 NC_005091.1 + 24127 0.67 0.813113
Target:  5'- cGGCGuuugcaaacaGCGUgCGAGGCACggGCAUCccGGAc -3'
miRNA:   3'- aCCGC----------UGUA-GCUCCGUG--UGUAGu-UCU- -5'
22622 5' -52.3 NC_005091.1 + 37427 0.67 0.813113
Target:  5'- gUGGCGACggCGAGGaCGgagUACGaggacuUCAAGAu -3'
miRNA:   3'- -ACCGCUGuaGCUCC-GU---GUGU------AGUUCU- -5'
22622 5' -52.3 NC_005091.1 + 33946 0.67 0.803425
Target:  5'- gGGCGGCGucgguagcgaauUCGAGGCGuCGC-UCAAc- -3'
miRNA:   3'- aCCGCUGU------------AGCUCCGU-GUGuAGUUcu -5'
22622 5' -52.3 NC_005091.1 + 44736 0.67 0.793548
Target:  5'- aUGGaCGACG-CGaAGGCGauCAUCAAGAa -3'
miRNA:   3'- -ACC-GCUGUaGC-UCCGUguGUAGUUCU- -5'
22622 5' -52.3 NC_005091.1 + 17351 0.68 0.783496
Target:  5'- gGGCG-CAUCGAGaccgcauCGCGCAgCAAGAc -3'
miRNA:   3'- aCCGCuGUAGCUCc------GUGUGUaGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.