miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22623 3' -57 NC_005091.1 + 106 0.7 0.374298
Target:  5'- cGCCcGACUCGCGcauGCGCugcaugacCGCGCAa -3'
miRNA:   3'- -CGGaCUGAGCGUuc-CGCGuu------GCGCGU- -5'
22623 3' -57 NC_005091.1 + 763 0.7 0.365663
Target:  5'- uGCg-GAUUCGCGcGGCGCAGucCGCGUAg -3'
miRNA:   3'- -CGgaCUGAGCGUuCCGCGUU--GCGCGU- -5'
22623 3' -57 NC_005091.1 + 3513 0.66 0.604526
Target:  5'- cGCUUcAUUCGCAAGGCGUcuCGCu-- -3'
miRNA:   3'- -CGGAcUGAGCGUUCCGCGuuGCGcgu -5'
22623 3' -57 NC_005091.1 + 6537 0.7 0.410191
Target:  5'- cGCCUG-CUUcCuucaGCGCAGCGCGCAc -3'
miRNA:   3'- -CGGACuGAGcGuuc-CGCGUUGCGCGU- -5'
22623 3' -57 NC_005091.1 + 9511 0.67 0.582817
Target:  5'- gGUCgUGGCacaUCGCGAGGCcgGCAGC-CGCGa -3'
miRNA:   3'- -CGG-ACUG---AGCGUUCCG--CGUUGcGCGU- -5'
22623 3' -57 NC_005091.1 + 9727 0.67 0.572019
Target:  5'- aGCCUgccagaggcGAUUCuGCGGGuuCGCAAUGCGCAu -3'
miRNA:   3'- -CGGA---------CUGAG-CGUUCc-GCGUUGCGCGU- -5'
22623 3' -57 NC_005091.1 + 10438 0.69 0.457939
Target:  5'- cGCCgucCUCGaugucGGGCGCGcgacACGCGCAg -3'
miRNA:   3'- -CGGacuGAGCgu---UCCGCGU----UGCGCGU- -5'
22623 3' -57 NC_005091.1 + 18309 0.68 0.477855
Target:  5'- uGCC-GAcCUCGCGAuGCGCGugGCGa- -3'
miRNA:   3'- -CGGaCU-GAGCGUUcCGCGUugCGCgu -5'
22623 3' -57 NC_005091.1 + 20012 0.71 0.332518
Target:  5'- aGCCUuucGugUaUGCGAGGCGCAGaccgcCGCGCu -3'
miRNA:   3'- -CGGA---CugA-GCGUUCCGCGUU-----GCGCGu -5'
22623 3' -57 NC_005091.1 + 20351 0.67 0.561269
Target:  5'- gGCU--ACUCGCAAaGCgGCGACGCGUc -3'
miRNA:   3'- -CGGacUGAGCGUUcCG-CGUUGCGCGu -5'
22623 3' -57 NC_005091.1 + 21195 0.67 0.572019
Target:  5'- cGCCcaUGG-UCGCAGGuauGCGCGGCGCGa- -3'
miRNA:   3'- -CGG--ACUgAGCGUUC---CGCGUUGCGCgu -5'
22623 3' -57 NC_005091.1 + 22119 0.69 0.457939
Target:  5'- gGCCgcauggGACggcaGCcaaaAAGGCGUGACGCGCc -3'
miRNA:   3'- -CGGa-----CUGag--CG----UUCCGCGUUGCGCGu -5'
22623 3' -57 NC_005091.1 + 23440 0.65 0.644879
Target:  5'- cGCCaUGaucugcaugaugacGCUCGCcaucuGGCGCAGgaacUGCGCAg -3'
miRNA:   3'- -CGG-AC--------------UGAGCGuu---CCGCGUU----GCGCGU- -5'
22623 3' -57 NC_005091.1 + 26091 0.67 0.547379
Target:  5'- cGUC-GGCgUGCAGGGCGCGAUuaaccuugcggcggGCGCAc -3'
miRNA:   3'- -CGGaCUGaGCGUUCCGCGUUG--------------CGCGU- -5'
22623 3' -57 NC_005091.1 + 26556 0.68 0.498189
Target:  5'- uCCUGACcCGCcuu-CGCGACGCGCu -3'
miRNA:   3'- cGGACUGaGCGuuccGCGUUGCGCGu -5'
22623 3' -57 NC_005091.1 + 29756 0.67 0.539944
Target:  5'- uUCUGGucCUCGuCAGGGcCGgAACGCGCu -3'
miRNA:   3'- cGGACU--GAGC-GUUCC-GCgUUGCGCGu -5'
22623 3' -57 NC_005091.1 + 31826 0.71 0.332518
Target:  5'- cGCCUcggacGGCUCGCAgaAGGCGUAcgGCauuucgGCGCAg -3'
miRNA:   3'- -CGGA-----CUGAGCGU--UCCGCGU--UG------CGCGU- -5'
22623 3' -57 NC_005091.1 + 33443 0.66 0.626328
Target:  5'- aGCgCUcGCUCgGCGAcGGaCGCGACGCaGCAa -3'
miRNA:   3'- -CG-GAcUGAG-CGUU-CC-GCGUUGCG-CGU- -5'
22623 3' -57 NC_005091.1 + 34848 0.71 0.34881
Target:  5'- gGUCU--CUCGCGAGaGcCGCGACGCGCc -3'
miRNA:   3'- -CGGAcuGAGCGUUC-C-GCGUUGCGCGu -5'
22623 3' -57 NC_005091.1 + 35239 0.68 0.477855
Target:  5'- uGCCggcaguacCUCGCGGcGGCGCcgcGACGCGUAc -3'
miRNA:   3'- -CGGacu-----GAGCGUU-CCGCG---UUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.