miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22623 5' -55.9 NC_005091.1 + 52640 0.66 0.700121
Target:  5'- -gCGUGCGUCg-CGCCGaUCccGUGuGCg -3'
miRNA:   3'- aaGCACGCAGaaGCGGC-AGa-CGCuCG- -5'
22623 5' -55.9 NC_005091.1 + 55428 0.66 0.656641
Target:  5'- cUUCGcaauaGCGUCgcggcCGCCGUCaGcCGGGCg -3'
miRNA:   3'- -AAGCa----CGCAGaa---GCGGCAGaC-GCUCG- -5'
22623 5' -55.9 NC_005091.1 + 6754 0.67 0.590935
Target:  5'- -aCGagGCgGUCcaCGCCGUCgaucuUGCGAGCg -3'
miRNA:   3'- aaGCa-CG-CAGaaGCGGCAG-----ACGCUCG- -5'
22623 5' -55.9 NC_005091.1 + 36508 0.67 0.590935
Target:  5'- -cCGUGCGcauggaagCGCCGUgCUGCG-GCg -3'
miRNA:   3'- aaGCACGCagaa----GCGGCA-GACGCuCG- -5'
22623 5' -55.9 NC_005091.1 + 29952 0.68 0.580052
Target:  5'- -gCGUGCGUaccCUUCGCgGUCgagaucaccGaCGAGCg -3'
miRNA:   3'- aaGCACGCA---GAAGCGgCAGa--------C-GCUCG- -5'
22623 5' -55.9 NC_005091.1 + 50427 0.68 0.578966
Target:  5'- -cCGUGaaaaCUUCGCCGUUcgcacggUGCGAGUa -3'
miRNA:   3'- aaGCACgca-GAAGCGGCAG-------ACGCUCG- -5'
22623 5' -55.9 NC_005091.1 + 14287 0.68 0.569212
Target:  5'- -aCGaUGCGUaucggCUUCGCgguguCGUCgGCGAGCg -3'
miRNA:   3'- aaGC-ACGCA-----GAAGCG-----GCAGaCGCUCG- -5'
22623 5' -55.9 NC_005091.1 + 28278 0.69 0.49516
Target:  5'- cUCG-GCGUC-UCGCCGaCgaauaucGCGGGCg -3'
miRNA:   3'- aAGCaCGCAGaAGCGGCaGa------CGCUCG- -5'
22623 5' -55.9 NC_005091.1 + 44214 0.69 0.48594
Target:  5'- -gCG-GCGUCUUCGCCugcguugucuucugCUGCGAGa -3'
miRNA:   3'- aaGCaCGCAGAAGCGGca------------GACGCUCg -5'
22623 5' -55.9 NC_005091.1 + 53060 0.7 0.464756
Target:  5'- aUgGUGCGgggUUCGCUGaUCgcgGCGAGCa -3'
miRNA:   3'- aAgCACGCag-AAGCGGC-AGa--CGCUCG- -5'
22623 5' -55.9 NC_005091.1 + 18388 0.7 0.454838
Target:  5'- cUCGUGuCGcUCgaaUUGCCGUCUuGCGAGa -3'
miRNA:   3'- aAGCAC-GC-AGa--AGCGGCAGA-CGCUCg -5'
22623 5' -55.9 NC_005091.1 + 16497 0.7 0.445036
Target:  5'- -cCGcGCGUaCUgcUUGCCGUCUGCcGGCg -3'
miRNA:   3'- aaGCaCGCA-GA--AGCGGCAGACGcUCG- -5'
22623 5' -55.9 NC_005091.1 + 49558 0.7 0.425793
Target:  5'- gUCGgggGCGUCUUCGuaCCGcCUGCGcGGUu -3'
miRNA:   3'- aAGCa--CGCAGAAGC--GGCaGACGC-UCG- -5'
22623 5' -55.9 NC_005091.1 + 33359 0.71 0.371171
Target:  5'- -gCGUcGCGUCcgUCGCCGa--GCGAGCg -3'
miRNA:   3'- aaGCA-CGCAGa-AGCGGCagaCGCUCG- -5'
22623 5' -55.9 NC_005091.1 + 21700 0.74 0.263315
Target:  5'- gUCGgGCGUUUgCGUCGUCUGCGuauAGCg -3'
miRNA:   3'- aAGCaCGCAGAaGCGGCAGACGC---UCG- -5'
22623 5' -55.9 NC_005091.1 + 38119 1.1 0.000786
Target:  5'- cUUCGUGCGUCUUCGCCGUCUGCGAGCa -3'
miRNA:   3'- -AAGCACGCAGAAGCGGCAGACGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.