miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22624 3' -51.7 NC_005091.1 + 27597 0.66 0.865531
Target:  5'- ----aUCGCGC-UCGCGUGCGacgaGGCAg -3'
miRNA:   3'- augagAGCGCGaAGCGUAUGU----UCGUg -5'
22624 3' -51.7 NC_005091.1 + 1107 0.66 0.856985
Target:  5'- --aUCUCGCGUUccgUCGUAUugAcgccgagcAGCGCg -3'
miRNA:   3'- augAGAGCGCGA---AGCGUAugU--------UCGUG- -5'
22624 3' -51.7 NC_005091.1 + 33354 0.66 0.856985
Target:  5'- uUGCUgCgUCGCGUccgUCGCcgaGCGAGCGCu -3'
miRNA:   3'- -AUGA-G-AGCGCGa--AGCGua-UGUUCGUG- -5'
22624 3' -51.7 NC_005091.1 + 52417 0.67 0.829851
Target:  5'- cUGCUCgccCGuCGCcucaacgUCGCAUGCGacgcAGCACu -3'
miRNA:   3'- -AUGAGa--GC-GCGa------AGCGUAUGU----UCGUG- -5'
22624 3' -51.7 NC_005091.1 + 12088 0.67 0.829851
Target:  5'- aACgUCUgCGCGUUcauggauacgaUCGCAUACGccgaaGGCACg -3'
miRNA:   3'- aUG-AGA-GCGCGA-----------AGCGUAUGU-----UCGUG- -5'
22624 3' -51.7 NC_005091.1 + 55416 0.67 0.829851
Target:  5'- cGgUCUCGCccaCUUCGagcGCGAGCACg -3'
miRNA:   3'- aUgAGAGCGc--GAAGCguaUGUUCGUG- -5'
22624 3' -51.7 NC_005091.1 + 42558 0.67 0.829851
Target:  5'- --aUCUCGCGC-UCGCcgAgAAGaCGCu -3'
miRNA:   3'- augAGAGCGCGaAGCGuaUgUUC-GUG- -5'
22624 3' -51.7 NC_005091.1 + 22255 0.67 0.82891
Target:  5'- -uCUC-CGCGCUUCGgaAUGCcguauccggaaucGAGCACg -3'
miRNA:   3'- auGAGaGCGCGAAGCg-UAUG-------------UUCGUG- -5'
22624 3' -51.7 NC_005091.1 + 26116 0.67 0.817445
Target:  5'- aGCUgaUCGCGCUcgccacggcguacgUCgGCGUGCAGGgCGCg -3'
miRNA:   3'- aUGAg-AGCGCGA--------------AG-CGUAUGUUC-GUG- -5'
22624 3' -51.7 NC_005091.1 + 43782 0.67 0.810615
Target:  5'- gUACUCguagagCGCGCcgagCGCAUA-GAGCAUg -3'
miRNA:   3'- -AUGAGa-----GCGCGaa--GCGUAUgUUCGUG- -5'
22624 3' -51.7 NC_005091.1 + 45182 0.67 0.790565
Target:  5'- cUGCUCUUccggcgacaGCGCaUCGaaCAUGCGGGCAUa -3'
miRNA:   3'- -AUGAGAG---------CGCGaAGC--GUAUGUUCGUG- -5'
22624 3' -51.7 NC_005091.1 + 55030 0.68 0.780265
Target:  5'- gACagC-CGCGCggCGCuugGCGAGCGCg -3'
miRNA:   3'- aUGa-GaGCGCGaaGCGua-UGUUCGUG- -5'
22624 3' -51.7 NC_005091.1 + 29273 0.68 0.769799
Target:  5'- aGCUUcgUCGCGCcauccgUCGCGUGCA-GCGu -3'
miRNA:   3'- aUGAG--AGCGCGa-----AGCGUAUGUuCGUg -5'
22624 3' -51.7 NC_005091.1 + 53021 0.68 0.759178
Target:  5'- gGCUgCUCGCGUucgUUCGCcgugACuGGCGCa -3'
miRNA:   3'- aUGA-GAGCGCG---AAGCGua--UGuUCGUG- -5'
22624 3' -51.7 NC_005091.1 + 16343 0.68 0.759178
Target:  5'- gUGCUCggCGCGUUcgUCGCGaGC-GGCGCa -3'
miRNA:   3'- -AUGAGa-GCGCGA--AGCGUaUGuUCGUG- -5'
22624 3' -51.7 NC_005091.1 + 510 0.68 0.759178
Target:  5'- cUGCUCgaccUGCGCcgUCGCGUGCGugagaaccGCGCg -3'
miRNA:   3'- -AUGAGa---GCGCGa-AGCGUAUGUu-------CGUG- -5'
22624 3' -51.7 NC_005091.1 + 57904 0.68 0.759178
Target:  5'- cUGCUCgaccUGCGCcgUCGCGUGCGugagaaccGCGCg -3'
miRNA:   3'- -AUGAGa---GCGCGa-AGCGUAUGUu-------CGUG- -5'
22624 3' -51.7 NC_005091.1 + 24976 0.68 0.748415
Target:  5'- cAUUCUCGUGCUUgcugCGCAgAUGAGCGa -3'
miRNA:   3'- aUGAGAGCGCGAA----GCGUaUGUUCGUg -5'
22624 3' -51.7 NC_005091.1 + 21098 0.7 0.624384
Target:  5'- aUACUCgcagUCGCGCcgCGCAUACcuGCGa -3'
miRNA:   3'- -AUGAG----AGCGCGaaGCGUAUGuuCGUg -5'
22624 3' -51.7 NC_005091.1 + 51512 0.7 0.624384
Target:  5'- gGCUgUCGaCGCUgCGCGUGCAGuCGCg -3'
miRNA:   3'- aUGAgAGC-GCGAaGCGUAUGUUcGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.