miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22624 5' -59.1 NC_005091.1 + 57895 0.66 0.539061
Target:  5'- cUGCGCCGUcGCGUG-CGUgagaaccGCGCGc -3'
miRNA:   3'- aGCGCGGCGaCGCACaGCGa------UGCGUc -5'
22624 5' -59.1 NC_005091.1 + 501 0.66 0.539061
Target:  5'- cUGCGCCGUcGCGUG-CGUgagaaccGCGCGc -3'
miRNA:   3'- aGCGCGGCGaCGCACaGCGa------UGCGUc -5'
22624 5' -59.1 NC_005091.1 + 40871 0.66 0.528704
Target:  5'- gUCuCGCCGgaUGCGUG-CGCaGCGCGa -3'
miRNA:   3'- -AGcGCGGCg-ACGCACaGCGaUGCGUc -5'
22624 5' -59.1 NC_005091.1 + 42666 0.66 0.518422
Target:  5'- -aGCGuCCGa-GCGUG-CGCgGCGCGGa -3'
miRNA:   3'- agCGC-GGCgaCGCACaGCGaUGCGUC- -5'
22624 5' -59.1 NC_005091.1 + 52100 0.67 0.488078
Target:  5'- cCGUauGCCGUgaaaagGCGgccGUCGCcgGCGCGGg -3'
miRNA:   3'- aGCG--CGGCGa-----CGCa--CAGCGa-UGCGUC- -5'
22624 5' -59.1 NC_005091.1 + 49034 0.67 0.478149
Target:  5'- gUGCGgUGCUGCGggcgcGcUGCUGCGCAc -3'
miRNA:   3'- aGCGCgGCGACGCa----CaGCGAUGCGUc -5'
22624 5' -59.1 NC_005091.1 + 10157 0.67 0.459563
Target:  5'- -aGCGCCGCacguuccugaugugcGCGUGUCcugcCUGCGCGa -3'
miRNA:   3'- agCGCGGCGa--------------CGCACAGc---GAUGCGUc -5'
22624 5' -59.1 NC_005091.1 + 718 0.67 0.458596
Target:  5'- cCGgGCUGCUGCGUGagGUcgaGCGcCAGu -3'
miRNA:   3'- aGCgCGGCGACGCACagCGa--UGC-GUC- -5'
22624 5' -59.1 NC_005091.1 + 26154 0.67 0.439478
Target:  5'- cCGCGaauCGCUGuCGUGguaucagCGCgUGCGCGGc -3'
miRNA:   3'- aGCGCg--GCGAC-GCACa------GCG-AUGCGUC- -5'
22624 5' -59.1 NC_005091.1 + 18151 0.68 0.411676
Target:  5'- gCGCGCCgGCaagauucagGCGgGUCGCUACGaggaAGg -3'
miRNA:   3'- aGCGCGG-CGa--------CGCaCAGCGAUGCg---UC- -5'
22624 5' -59.1 NC_005091.1 + 40766 0.68 0.402654
Target:  5'- aUUGCcaGCCGCUGCugaacGUGUuccgugaagggCGCUGCGCGu -3'
miRNA:   3'- -AGCG--CGGCGACG-----CACA-----------GCGAUGCGUc -5'
22624 5' -59.1 NC_005091.1 + 31408 0.68 0.402654
Target:  5'- gUCGCGCCgaacgugcaagGCcGCGUGaUCGCUGCucGUGGa -3'
miRNA:   3'- -AGCGCGG-----------CGaCGCAC-AGCGAUG--CGUC- -5'
22624 5' -59.1 NC_005091.1 + 53145 0.69 0.376352
Target:  5'- gCGCGCUGuCUcGCGUGauucCGCUguagcGCGCGGg -3'
miRNA:   3'- aGCGCGGC-GA-CGCACa---GCGA-----UGCGUC- -5'
22624 5' -59.1 NC_005091.1 + 3368 0.69 0.376352
Target:  5'- -gGCauGCCGCU-CGUGUCGCUcUGCAa -3'
miRNA:   3'- agCG--CGGCGAcGCACAGCGAuGCGUc -5'
22624 5' -59.1 NC_005091.1 + 26012 0.69 0.335163
Target:  5'- cUCGCcgugGCCGCUGgaacgaacgaccCGaaaGUCGUUGCGCAGg -3'
miRNA:   3'- -AGCG----CGGCGAC------------GCa--CAGCGAUGCGUC- -5'
22624 5' -59.1 NC_005091.1 + 51217 0.7 0.315083
Target:  5'- gCGCGUCGCUGUGggaagcaacgauguaUGUUGCUGCcCGGc -3'
miRNA:   3'- aGCGCGGCGACGC---------------ACAGCGAUGcGUC- -5'
22624 5' -59.1 NC_005091.1 + 51025 0.7 0.290216
Target:  5'- gCGCaCCGCgcuUGCG-GUCGCUgACGCGGc -3'
miRNA:   3'- aGCGcGGCG---ACGCaCAGCGA-UGCGUC- -5'
22624 5' -59.1 NC_005091.1 + 14241 0.71 0.283201
Target:  5'- gUCGaGCCGCcuUGCGUGUCG-UACGCc- -3'
miRNA:   3'- -AGCgCGGCG--ACGCACAGCgAUGCGuc -5'
22624 5' -59.1 NC_005091.1 + 6089 0.71 0.27632
Target:  5'- gUCGCGCCGCUuCGgcucGUCGCc-CGCAa -3'
miRNA:   3'- -AGCGCGGCGAcGCa---CAGCGauGCGUc -5'
22624 5' -59.1 NC_005091.1 + 48710 0.72 0.243914
Target:  5'- gCGgGCUGCUGCGUGUUGgUGuCGCc- -3'
miRNA:   3'- aGCgCGGCGACGCACAGCgAU-GCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.