miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22625 5' -49.6 NC_005091.1 + 57375 0.66 0.963418
Target:  5'- -uUCGGuacgAAGUGAUUgcucaugCCGugGUCCUCCUg -3'
miRNA:   3'- uuAGCC----UUCAUUGAa------GGC--UAGGAGGG- -5'
22625 5' -49.6 NC_005091.1 + 40390 0.66 0.959527
Target:  5'- --gCGGAugauAGcGGCUUCgaGGUCCUUCCa -3'
miRNA:   3'- uuaGCCU----UCaUUGAAGg-CUAGGAGGG- -5'
22625 5' -49.6 NC_005091.1 + 7639 0.66 0.959123
Target:  5'- --cCuGAAGUuACUUCCGAUuuacagcCCUUCCg -3'
miRNA:   3'- uuaGcCUUCAuUGAAGGCUA-------GGAGGG- -5'
22625 5' -49.6 NC_005091.1 + 1563 0.67 0.936376
Target:  5'- cGGUCGGAAGUuACUUCagaggccggccgccgGAUCgUCCg -3'
miRNA:   3'- -UUAGCCUUCAuUGAAGg--------------CUAGgAGGg -5'
22625 5' -49.6 NC_005091.1 + 7563 0.69 0.84033
Target:  5'- aAAUCGGAAGUAACUUCaGggCCgcuucggcggCCUu -3'
miRNA:   3'- -UUAGCCUUCAUUGAAGgCuaGGa---------GGG- -5'
22625 5' -49.6 NC_005091.1 + 48392 0.71 0.761015
Target:  5'- aAAUCGGAAGUAACUUCgGA-CaaaCCg -3'
miRNA:   3'- -UUAGCCUUCAUUGAAGgCUaGgagGG- -5'
22625 5' -49.6 NC_005091.1 + 34993 0.72 0.728591
Target:  5'- uGUCcGAAGUuACUUCCGGUCg-CCCg -3'
miRNA:   3'- uUAGcCUUCAuUGAAGGCUAGgaGGG- -5'
22625 5' -49.6 NC_005091.1 + 8866 0.73 0.638485
Target:  5'- uGGUCGGAAaUAACUUCCGGUCag-CCa -3'
miRNA:   3'- -UUAGCCUUcAUUGAAGGCUAGgagGG- -5'
22625 5' -49.6 NC_005091.1 + 54892 0.74 0.615661
Target:  5'- gGGUCGGAAGUuACUUCCGGUCg---- -3'
miRNA:   3'- -UUAGCCUUCAuUGAAGGCUAGgaggg -5'
22625 5' -49.6 NC_005091.1 + 22493 0.74 0.604267
Target:  5'- gAAUCGGAAGUAACUUCgug-CCUUUCg -3'
miRNA:   3'- -UUAGCCUUCAUUGAAGgcuaGGAGGG- -5'
22625 5' -49.6 NC_005091.1 + 39824 0.79 0.364977
Target:  5'- gGAUCGGAAGUuACUUCCGAUUUUUUUg -3'
miRNA:   3'- -UUAGCCUUCAuUGAAGGCUAGGAGGG- -5'
22625 5' -49.6 NC_005091.1 + 39852 0.8 0.322155
Target:  5'- gGAUCGGGAGUAACUUCaCGucaGUCCUUgCg -3'
miRNA:   3'- -UUAGCCUUCAUUGAAG-GC---UAGGAGgG- -5'
22625 5' -49.6 NC_005091.1 + 32187 0.8 0.314054
Target:  5'- gGAUCGGAAGUAACUUCCGGUgCg--- -3'
miRNA:   3'- -UUAGCCUUCAUUGAAGGCUAgGaggg -5'
22625 5' -49.6 NC_005091.1 + 54816 0.81 0.261669
Target:  5'- --cCGGAAGUAACUUCCGAcCCgUCCg -3'
miRNA:   3'- uuaGCCUUCAUUGAAGGCUaGG-AGGg -5'
22625 5' -49.6 NC_005091.1 + 32263 0.82 0.248067
Target:  5'- --cCGGAAGUuACUUCCGAUCCggCCg -3'
miRNA:   3'- uuaGCCUUCAuUGAAGGCUAGGagGG- -5'
22625 5' -49.6 NC_005091.1 + 39903 1.11 0.002884
Target:  5'- aAAUCGGAAGUAACUUCCGAUCCUCCCg -3'
miRNA:   3'- -UUAGCCUUCAUUGAAGGCUAGGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.