miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22627 3' -57.3 NC_005091.1 + 53049 0.66 0.599023
Target:  5'- uUCGcUGAUCGCGGCGaGCaUGG-CGAa -3'
miRNA:   3'- uAGUuGCUAGCGCCGCaCG-GCCaGCU- -5'
22627 3' -57.3 NC_005091.1 + 26677 0.66 0.599023
Target:  5'- -gCGGCGGcCgGCGGCG-GCCGGgacuUCGAa -3'
miRNA:   3'- uaGUUGCUaG-CGCCGCaCGGCC----AGCU- -5'
22627 3' -57.3 NC_005091.1 + 24299 0.67 0.556271
Target:  5'- cUCGAucugcgccuUGAUCGCGGCGauagGCUGGccgUCGAc -3'
miRNA:   3'- uAGUU---------GCUAGCGCCGCa---CGGCC---AGCU- -5'
22627 3' -57.3 NC_005091.1 + 6598 0.67 0.555212
Target:  5'- aGUCGAUGAUcgcucgCGCGGCGUccgggcuGCCGG-CGu -3'
miRNA:   3'- -UAGUUGCUA------GCGCCGCA-------CGGCCaGCu -5'
22627 3' -57.3 NC_005091.1 + 14279 0.68 0.504183
Target:  5'- uAUCGGCu-UCGCGGUGUcGUCGG-CGAg -3'
miRNA:   3'- -UAGUUGcuAGCGCCGCA-CGGCCaGCU- -5'
22627 3' -57.3 NC_005091.1 + 1996 0.68 0.494011
Target:  5'- -aCGACGcuGUCGCGGCcaUGCUGG-CGAa -3'
miRNA:   3'- uaGUUGC--UAGCGCCGc-ACGGCCaGCU- -5'
22627 3' -57.3 NC_005091.1 + 29513 0.68 0.483934
Target:  5'- aAUCGACGcgCaaggGCGGCGUcUCGGUCGu -3'
miRNA:   3'- -UAGUUGCuaG----CGCCGCAcGGCCAGCu -5'
22627 3' -57.3 NC_005091.1 + 1949 0.68 0.473956
Target:  5'- -gCGACGAU-GCGGCc-GCCGuGUCGAa -3'
miRNA:   3'- uaGUUGCUAgCGCCGcaCGGC-CAGCU- -5'
22627 3' -57.3 NC_005091.1 + 26083 0.69 0.464083
Target:  5'- -aCAGCGAuUCGCGGUuccccgucGUGaugCGGUCGAg -3'
miRNA:   3'- uaGUUGCU-AGCGCCG--------CACg--GCCAGCU- -5'
22627 3' -57.3 NC_005091.1 + 50626 0.69 0.464083
Target:  5'- uGUUGACGuaCGCGGCG-GCCGGuUCGu -3'
miRNA:   3'- -UAGUUGCuaGCGCCGCaCGGCC-AGCu -5'
22627 3' -57.3 NC_005091.1 + 23499 0.69 0.453347
Target:  5'- -gCGACGcgCGCGGCGauggcgcUGCuCGGUCu- -3'
miRNA:   3'- uaGUUGCuaGCGCCGC-------ACG-GCCAGcu -5'
22627 3' -57.3 NC_005091.1 + 36313 0.69 0.425711
Target:  5'- --gAGCG-UCGCGGCGUGCCGacccgcuuGUCa- -3'
miRNA:   3'- uagUUGCuAGCGCCGCACGGC--------CAGcu -5'
22627 3' -57.3 NC_005091.1 + 47654 0.7 0.407247
Target:  5'- uUCAugGCGAUCauauaGCGGCGUGCC-GUgGAa -3'
miRNA:   3'- uAGU--UGCUAG-----CGCCGCACGGcCAgCU- -5'
22627 3' -57.3 NC_005091.1 + 50348 0.7 0.389293
Target:  5'- --aGACGAUCGCcGCaaUGCCGGUCGc -3'
miRNA:   3'- uagUUGCUAGCGcCGc-ACGGCCAGCu -5'
22627 3' -57.3 NC_005091.1 + 55830 0.71 0.338636
Target:  5'- -gCGACGAagaGCGGCGcaGCCGGUCa- -3'
miRNA:   3'- uaGUUGCUag-CGCCGCa-CGGCCAGcu -5'
22627 3' -57.3 NC_005091.1 + 13907 0.71 0.330673
Target:  5'- uUCAGCGggCGCaGCGUGaCGGUCa- -3'
miRNA:   3'- uAGUUGCuaGCGcCGCACgGCCAGcu -5'
22627 3' -57.3 NC_005091.1 + 4212 0.71 0.330673
Target:  5'- --gGAUGAagUGCGGCGUGCCGGgccagcaguugUCGAg -3'
miRNA:   3'- uagUUGCUa-GCGCCGCACGGCC-----------AGCU- -5'
22627 3' -57.3 NC_005091.1 + 44148 0.74 0.233645
Target:  5'- --aGAUGAUCGgGGCGUauGCCGGUCu- -3'
miRNA:   3'- uagUUGCUAGCgCCGCA--CGGCCAGcu -5'
22627 3' -57.3 NC_005091.1 + 41409 1.06 0.001063
Target:  5'- cAUCAACGAUCGCGGCGUGCCGGUCGAu -3'
miRNA:   3'- -UAGUUGCUAGCGCCGCACGGCCAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.