miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22629 3' -60.2 NC_005091.1 + 16186 0.66 0.451513
Target:  5'- -gGCUGGCcucguccccgauccGGGUGCAaCGGCcGGCa- -3'
miRNA:   3'- cgUGACCG--------------CCCACGUgGCCGuUCGca -5'
22629 3' -60.2 NC_005091.1 + 6996 0.66 0.444842
Target:  5'- aGCuGCUGGCGGaagGCAa-GGUGAGCGg -3'
miRNA:   3'- -CG-UGACCGCCca-CGUggCCGUUCGCa -5'
22629 3' -60.2 NC_005091.1 + 50951 0.67 0.372786
Target:  5'- cCGCaaGCGcGGUGCGCacgggcaaauCGGCAAGCGa -3'
miRNA:   3'- cGUGacCGC-CCACGUG----------GCCGUUCGCa -5'
22629 3' -60.2 NC_005091.1 + 56434 0.68 0.347887
Target:  5'- gGCuuCUGGCGGGacgGCAggaaauCUGGCGGGgGUa -3'
miRNA:   3'- -CGu-GACCGCCCa--CGU------GGCCGUUCgCA- -5'
22629 3' -60.2 NC_005091.1 + 815 0.68 0.331959
Target:  5'- uGCGCUGccgcGUGGGUGUACggCGGCGAuccuGCGg -3'
miRNA:   3'- -CGUGAC----CGCCCACGUG--GCCGUU----CGCa -5'
22629 3' -60.2 NC_005091.1 + 4822 0.69 0.309084
Target:  5'- cGCGCUcGGCGcGGcgGCAaCGGuCAAGCGg -3'
miRNA:   3'- -CGUGA-CCGC-CCa-CGUgGCC-GUUCGCa -5'
22629 3' -60.2 NC_005091.1 + 34791 0.69 0.280485
Target:  5'- cCGCUucaGCGGGUugaugaggGCAuCCGGCGAGCGa -3'
miRNA:   3'- cGUGAc--CGCCCA--------CGU-GGCCGUUCGCa -5'
22629 3' -60.2 NC_005091.1 + 15592 0.69 0.280485
Target:  5'- cCACUGGUacccGaGGaaaaucucaGCACCGGCAAGCGg -3'
miRNA:   3'- cGUGACCG----C-CCa--------CGUGGCCGUUCGCa -5'
22629 3' -60.2 NC_005091.1 + 56803 0.7 0.247742
Target:  5'- cGCGaUGGCGuGGcUGCACCGcGCAgccAGCGa -3'
miRNA:   3'- -CGUgACCGC-CC-ACGUGGC-CGU---UCGCa -5'
22629 3' -60.2 NC_005091.1 + 56098 0.7 0.247742
Target:  5'- aGCGCgGGCGGGagGUcgGCCGGCGcGCa- -3'
miRNA:   3'- -CGUGaCCGCCCa-CG--UGGCCGUuCGca -5'
22629 3' -60.2 NC_005091.1 + 53271 0.72 0.196825
Target:  5'- cGCACUuugGGCGGaUGCACCGGaAGGCu- -3'
miRNA:   3'- -CGUGA---CCGCCcACGUGGCCgUUCGca -5'
22629 3' -60.2 NC_005091.1 + 14494 0.74 0.132175
Target:  5'- gGCuGCUGaacGUcGGUGCGCCGGUAAGCGUg -3'
miRNA:   3'- -CG-UGAC---CGcCCACGUGGCCGUUCGCA- -5'
22629 3' -60.2 NC_005091.1 + 44526 1.08 0.000401
Target:  5'- gGCACUGGCGGGUGCACCGGCAAGCGUu -3'
miRNA:   3'- -CGUGACCGCCCACGUGGCCGUUCGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.