miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
22629	5'	-51.8	NC_005091.1	+	45927	0.67	0.811878
	Target:  5'- --cCGGUguuGCGCCGCGuCGAUGcGCAGg -3' miRNA:   3'- gauGCCA---CGUGGUGU-GUUACaCGUCa -5'
22629	5'	-51.8	NC_005091.1	+	5196	0.68	0.771557
	Target:  5'- ---aGGUGCGCauuCGCGCAcgGUGCAa- -3' miRNA:   3'- gaugCCACGUG---GUGUGUuaCACGUca -5'
22629	5'	-51.8	NC_005091.1	+	53192	0.68	0.761063
	Target:  5'- --cCGGUGCAuCCGCcCAAaGUGCGGc -3' miRNA:   3'- gauGCCACGU-GGUGuGUUaCACGUCa -5'
22629	5'	-51.8	NC_005091.1	+	49890	0.7	0.673099
	Target:  5'- cCUGCGGUGCGgUGC-CGAUaUGCAGg -3' miRNA:   3'- -GAUGCCACGUgGUGuGUUAcACGUCa -5'
22629	5'	-51.8	NC_005091.1	+	681	0.71	0.616369
	Target:  5'- -cGCGGacUGCGCCGCGCGAauccGCAGUg -3' miRNA:   3'- gaUGCC--ACGUGGUGUGUUaca-CGUCA- -5'
22629	5'	-51.8	NC_005091.1	+	42956	0.72	0.571177
	Target:  5'- -cACGGacgGCACCAUGCGuaucgagaAUGUGCGGg -3' miRNA:   3'- gaUGCCa--CGUGGUGUGU--------UACACGUCa -5'
22629	5'	-51.8	NC_005091.1	+	49041	0.77	0.277448
	Target:  5'- gCUGCGGgcgcgcUGCugCGCACcGUGUGCGGg -3' miRNA:   3'- -GAUGCC------ACGugGUGUGuUACACGUCa -5'
22629	5'	-51.8	NC_005091.1	+	44491	1.08	0.002389
	Target:  5'- uCUACGGUGCACCACACAAUGUGCAGUg -3' miRNA:   3'- -GAUGCCACGUGGUGUGUUACACGUCA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home