miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2263 3' -54.7 NC_001405.1 + 3589 0.65 0.635789
Target:  5'- cCCACCUuauauauUCUUUCCCAcccuuaagccacGCCCACAc- -3'
miRNA:   3'- -GGUGGA-------AGAAGGGGUac----------CGGGUGUug -5'
2263 3' -54.7 NC_001405.1 + 15781 0.66 0.627786
Target:  5'- gCACCUg---CCCCuacguuuacaaGGCCCugGGCa -3'
miRNA:   3'- gGUGGAagaaGGGGua---------CCGGGugUUG- -5'
2263 3' -54.7 NC_001405.1 + 30709 0.66 0.618643
Target:  5'- gCUGCCUgcaCUUCCCCuaucagGGUCCAgAGg -3'
miRNA:   3'- -GGUGGAa--GAAGGGGua----CCGGGUgUUg -5'
2263 3' -54.7 NC_001405.1 + 33313 0.66 0.607225
Target:  5'- aCGCCUUg-UCCUCcgGGCacaGCAGCg -3'
miRNA:   3'- gGUGGAAgaAGGGGuaCCGgg-UGUUG- -5'
2263 3' -54.7 NC_001405.1 + 16322 0.66 0.606085
Target:  5'- gCCAgCCUUCgagcggCCCgCAUGGCCgcccgucggccggUGCGACg -3'
miRNA:   3'- -GGU-GGAAGaa----GGG-GUACCGG-------------GUGUUG- -5'
2263 3' -54.7 NC_001405.1 + 30291 0.67 0.550681
Target:  5'- aCCACCcuaCUUUCCCAguGCCCGCu-- -3'
miRNA:   3'- -GGUGGaa-GAAGGGGUacCGGGUGuug -5'
2263 3' -54.7 NC_001405.1 + 12515 0.67 0.53622
Target:  5'- aCCACCg-CUUCCagaauugcggagagCCGguUGGCCUGCGGCu -3'
miRNA:   3'- -GGUGGaaGAAGG--------------GGU--ACCGGGUGUUG- -5'
2263 3' -54.7 NC_001405.1 + 18445 0.68 0.517515
Target:  5'- gUCACCagaguUUCUUCCCUGUcGGgCCGCGGa -3'
miRNA:   3'- -GGUGG-----AAGAAGGGGUA-CCgGGUGUUg -5'
2263 3' -54.7 NC_001405.1 + 25460 0.68 0.485174
Target:  5'- aCgGCCUUCaacgagcgCUCCGUGGCCgCGCAc- -3'
miRNA:   3'- -GgUGGAAGaa------GGGGUACCGG-GUGUug -5'
2263 3' -54.7 NC_001405.1 + 831 0.68 0.474608
Target:  5'- gCCGCCUcacCUUUCCCGgcaGCCCgaGCAGCc -3'
miRNA:   3'- -GGUGGAa--GAAGGGGUac-CGGG--UGUUG- -5'
2263 3' -54.7 NC_001405.1 + 27389 0.72 0.307781
Target:  5'- -aACCUUaaUCCCCGuaguUGGCCCGCuGCc -3'
miRNA:   3'- ggUGGAAgaAGGGGU----ACCGGGUGuUG- -5'
2263 3' -54.7 NC_001405.1 + 9005 0.73 0.236307
Target:  5'- aCGCCUUCUcgCagUCAUGGCCCGCAu- -3'
miRNA:   3'- gGUGGAAGAa-Gg-GGUACCGGGUGUug -5'
2263 3' -54.7 NC_001405.1 + 20714 1.12 0.000371
Target:  5'- gCCACCUUCUUCCCCAUGGCCCACAACa -3'
miRNA:   3'- -GGUGGAAGAAGGGGUACCGGGUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.