miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22631 3' -57.8 NC_005091.1 + 25725 0.66 0.623144
Target:  5'- aCUGCGCGgccagcUCGGCGauCGGCuGCc-CGCCGc -3'
miRNA:   3'- -GACGCGU------AGCUGC--GCCG-CGuuGUGGC- -5'
22631 3' -57.8 NC_005091.1 + 12160 0.66 0.623144
Target:  5'- -aGCGCG-CGuACuGCGGCGggauCAGCGCCu -3'
miRNA:   3'- gaCGCGUaGC-UG-CGCCGC----GUUGUGGc -5'
22631 3' -57.8 NC_005091.1 + 2626 0.66 0.623144
Target:  5'- aUGCGU-UCGAUaCGGCGCAGacUAUCGg -3'
miRNA:   3'- gACGCGuAGCUGcGCCGCGUU--GUGGC- -5'
22631 3' -57.8 NC_005091.1 + 45166 0.66 0.623144
Target:  5'- -aGCGCAUCGAacaUGCGG-GCAuagggauUACCa -3'
miRNA:   3'- gaCGCGUAGCU---GCGCCgCGUu------GUGGc -5'
22631 3' -57.8 NC_005091.1 + 30975 0.66 0.612398
Target:  5'- -aGCGgAUCgGACGUGGCcugaucccacGCuGCGCCGc -3'
miRNA:   3'- gaCGCgUAG-CUGCGCCG----------CGuUGUGGC- -5'
22631 3' -57.8 NC_005091.1 + 49875 0.66 0.612398
Target:  5'- uUG-GCAUCGucggccccUGCGGUGCggUGCCGa -3'
miRNA:   3'- gACgCGUAGCu-------GCGCCGCGuuGUGGC- -5'
22631 3' -57.8 NC_005091.1 + 48901 0.66 0.60167
Target:  5'- aUGU-CAUCGGCcguaCGGCGCAGCGCg- -3'
miRNA:   3'- gACGcGUAGCUGc---GCCGCGUUGUGgc -5'
22631 3' -57.8 NC_005091.1 + 23420 0.66 0.60167
Target:  5'- -aGCGcCAUCGcCGC-GCGCGuCGCCa -3'
miRNA:   3'- gaCGC-GUAGCuGCGcCGCGUuGUGGc -5'
22631 3' -57.8 NC_005091.1 + 31790 0.66 0.60167
Target:  5'- -gGCGCAgccgaaggCGGC-CGGCGCGgcuacgguaucGCACCc -3'
miRNA:   3'- gaCGCGUa-------GCUGcGCCGCGU-----------UGUGGc -5'
22631 3' -57.8 NC_005091.1 + 10816 0.66 0.60167
Target:  5'- -cGCGCAUUGcACuCGGCaGCGACgACCc -3'
miRNA:   3'- gaCGCGUAGC-UGcGCCG-CGUUG-UGGc -5'
22631 3' -57.8 NC_005091.1 + 51879 0.66 0.598455
Target:  5'- -aGCGCAUCGGCaaacgacgcucgucGUaacccaucaGGCGCGGCACg- -3'
miRNA:   3'- gaCGCGUAGCUG--------------CG---------CCGCGUUGUGgc -5'
22631 3' -57.8 NC_005091.1 + 374 0.66 0.590966
Target:  5'- -aGUGCGUCGAUGCccggcuuguucuGcGCGCcaAAUACCGa -3'
miRNA:   3'- gaCGCGUAGCUGCG------------C-CGCG--UUGUGGC- -5'
22631 3' -57.8 NC_005091.1 + 14284 0.66 0.590966
Target:  5'- aUGCGUAUCGGCuucGCGGUGUcguCGgCGa -3'
miRNA:   3'- gACGCGUAGCUG---CGCCGCGuu-GUgGC- -5'
22631 3' -57.8 NC_005091.1 + 38166 0.66 0.590966
Target:  5'- uUGCgGUAUCGAgccugacuCGCaaGGCGCAACGCg- -3'
miRNA:   3'- gACG-CGUAGCU--------GCG--CCGCGUUGUGgc -5'
22631 3' -57.8 NC_005091.1 + 57768 0.66 0.590966
Target:  5'- -aGUGCGUCGAUGCccggcuuguucuGcGCGCcaAAUACCGa -3'
miRNA:   3'- gaCGCGUAGCUGCG------------C-CGCG--UUGUGGC- -5'
22631 3' -57.8 NC_005091.1 + 50122 0.66 0.590966
Target:  5'- uUGCGCGcCGACuacaGgGGCGCAcuggaACCGg -3'
miRNA:   3'- gACGCGUaGCUG----CgCCGCGUug---UGGC- -5'
22631 3' -57.8 NC_005091.1 + 27778 0.66 0.584559
Target:  5'- cCUGCGCGugcggggucucucguUgacCGAUGUGGCGCAGC-UCGu -3'
miRNA:   3'- -GACGCGU---------------A---GCUGCGCCGCGUUGuGGC- -5'
22631 3' -57.8 NC_005091.1 + 26747 0.66 0.580294
Target:  5'- -cGCGCGU-GAUGC-GCuCAACGCCGg -3'
miRNA:   3'- gaCGCGUAgCUGCGcCGcGUUGUGGC- -5'
22631 3' -57.8 NC_005091.1 + 27515 0.66 0.569665
Target:  5'- uCUGCcuCGUCGcACGCGaGCGCGAuCAUCu -3'
miRNA:   3'- -GACGc-GUAGC-UGCGC-CGCGUU-GUGGc -5'
22631 3' -57.8 NC_005091.1 + 19095 0.66 0.569665
Target:  5'- -aGUuCAUCGACGgGGCcacgGCAaaGCGCCGc -3'
miRNA:   3'- gaCGcGUAGCUGCgCCG----CGU--UGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.