miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22631 5' -54.8 NC_005091.1 + 18105 0.66 0.743814
Target:  5'- cUCGAUGcCGAGCuGCGGCacGCUg-- -3'
miRNA:   3'- aAGCUACaGCUCGcCGCUGa-CGAaca -5'
22631 5' -54.8 NC_005091.1 + 20123 0.66 0.722448
Target:  5'- --aGAUGUCGAugacguucaagcGCGGCGGuCUGCg--- -3'
miRNA:   3'- aagCUACAGCU------------CGCCGCU-GACGaaca -5'
22631 5' -54.8 NC_005091.1 + 14529 0.71 0.403269
Target:  5'- cUCGAUGcCgGGGCGaCGGCUGCUUGc -3'
miRNA:   3'- aAGCUACaG-CUCGCcGCUGACGAACa -5'
22631 5' -54.8 NC_005091.1 + 10431 0.74 0.28663
Target:  5'- cUCGAUGUCGGGCGcGCGACacGCgcaGUa -3'
miRNA:   3'- aAGCUACAGCUCGC-CGCUGa-CGaa-CA- -5'
22631 5' -54.8 NC_005091.1 + 45973 1.05 0.001837
Target:  5'- cUUCGAUGUCGAGCGGCGACUGCUUGUa -3'
miRNA:   3'- -AAGCUACAGCUCGCCGCUGACGAACA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.