miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22632 5' -53 NC_005091.1 + 40808 0.66 0.865147
Target:  5'- gCGAgACCGuccauggguuccuucAUCAUCagGCCGAGCAGg- -3'
miRNA:   3'- -GCU-UGGCu--------------UAGUAGa-CGGCUCGUCgc -5'
22632 5' -53 NC_005091.1 + 7188 0.66 0.856016
Target:  5'- gCGuuACCu--UCGUCuUGCCG-GCAGCGg -3'
miRNA:   3'- -GCu-UGGcuuAGUAG-ACGGCuCGUCGC- -5'
22632 5' -53 NC_005091.1 + 23711 0.66 0.847464
Target:  5'- gGAACCGGAgauGUC-GCCGGGCuucGGCc -3'
miRNA:   3'- gCUUGGCUUag-UAGaCGGCUCG---UCGc -5'
22632 5' -53 NC_005091.1 + 30349 0.66 0.820462
Target:  5'- aCGAgAUCGAG-CAUCUGCaCGAGC-GCc -3'
miRNA:   3'- -GCU-UGGCUUaGUAGACG-GCUCGuCGc -5'
22632 5' -53 NC_005091.1 + 57079 0.66 0.819529
Target:  5'- aCGAACuCGAccggcaagaagacAaCAUUgcgGCCGAGCGGCu -3'
miRNA:   3'- -GCUUG-GCU-------------UaGUAGa--CGGCUCGUCGc -5'
22632 5' -53 NC_005091.1 + 36571 0.67 0.811044
Target:  5'- uCGAACCGAcuuUCAagCUGuuGAagugggaugacuGCGGCGa -3'
miRNA:   3'- -GCUUGGCUu--AGUa-GACggCU------------CGUCGC- -5'
22632 5' -53 NC_005091.1 + 32808 0.67 0.811044
Target:  5'- gGAAgCGAuggCGUaggcgGCCGAGUAGCa -3'
miRNA:   3'- gCUUgGCUua-GUAga---CGGCUCGUCGc -5'
22632 5' -53 NC_005091.1 + 13754 0.67 0.811044
Target:  5'- cCGAGCCGAAgu-UCUGCaCGAcuugaaucGCAGUc -3'
miRNA:   3'- -GCUUGGCUUaguAGACG-GCU--------CGUCGc -5'
22632 5' -53 NC_005091.1 + 16018 0.67 0.771565
Target:  5'- -aGGCCGAcaagcGUCGUgCUGCCGccggccGGCGGCa -3'
miRNA:   3'- gcUUGGCU-----UAGUA-GACGGC------UCGUCGc -5'
22632 5' -53 NC_005091.1 + 6589 0.68 0.7509
Target:  5'- aCGAugUGGAUCGa--GUCGGGCGGCa -3'
miRNA:   3'- -GCUugGCUUAGUagaCGGCUCGUCGc -5'
22632 5' -53 NC_005091.1 + 48908 0.68 0.7509
Target:  5'- -aGGCCGcauGUCAUCgGCCGuacggcGCAGCGc -3'
miRNA:   3'- gcUUGGCu--UAGUAGaCGGCu-----CGUCGC- -5'
22632 5' -53 NC_005091.1 + 17741 0.68 0.740376
Target:  5'- aCGAggauACCGAccUCAUCgaGCCGGGCAuggccGCGa -3'
miRNA:   3'- -GCU----UGGCUu-AGUAGa-CGGCUCGU-----CGC- -5'
22632 5' -53 NC_005091.1 + 8368 0.68 0.740376
Target:  5'- -aGACCGGcauauUCAUCUGCCGGGCc--- -3'
miRNA:   3'- gcUUGGCUu----AGUAGACGGCUCGucgc -5'
22632 5' -53 NC_005091.1 + 3323 0.68 0.740376
Target:  5'- gCGggUUGaAGUCAUCgaucgagcgGCCG-GCGGCGa -3'
miRNA:   3'- -GCuuGGC-UUAGUAGa--------CGGCuCGUCGC- -5'
22632 5' -53 NC_005091.1 + 41242 0.68 0.72653
Target:  5'- -aGGCCGGugaucgcgcgCAUCUGCCGAacgaguuccagcuuGCGGCGa -3'
miRNA:   3'- gcUUGGCUua--------GUAGACGGCU--------------CGUCGC- -5'
22632 5' -53 NC_005091.1 + 41954 0.68 0.719006
Target:  5'- aGuucuCCGGAUUcgCgagGUCGAGCAGCa -3'
miRNA:   3'- gCuu--GGCUUAGuaGa--CGGCUCGUCGc -5'
22632 5' -53 NC_005091.1 + 31312 0.68 0.716848
Target:  5'- cCGAACCGuacgcucaagCGUCgUGCCGgcgAGCAGCc -3'
miRNA:   3'- -GCUUGGCuua-------GUAG-ACGGC---UCGUCGc -5'
22632 5' -53 NC_005091.1 + 31285 0.69 0.708184
Target:  5'- cCGGACgGAAcgucuUCGUCgUGUauccaCGAGCAGCGa -3'
miRNA:   3'- -GCUUGgCUU-----AGUAG-ACG-----GCUCGUCGC- -5'
22632 5' -53 NC_005091.1 + 15857 0.69 0.697285
Target:  5'- -aAACCGGGggCGUCggcaugcguguUGCCGAGCuGCGg -3'
miRNA:   3'- gcUUGGCUUa-GUAG-----------ACGGCUCGuCGC- -5'
22632 5' -53 NC_005091.1 + 55952 0.69 0.686322
Target:  5'- gGGAUCGAugGUCAg--GCCGuGCAGCu -3'
miRNA:   3'- gCUUGGCU--UAGUagaCGGCuCGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.