miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22632 5' -53 NC_005091.1 + 34273 0.7 0.630936
Target:  5'- gCGAACCGGAUCA---GUCGcGCGGCa -3'
miRNA:   3'- -GCUUGGCUUAGUagaCGGCuCGUCGc -5'
22632 5' -53 NC_005091.1 + 34037 0.7 0.607605
Target:  5'- gCGAaccGCCGGA-CAUCUGCgaauggaugaacuCGGGCGGCa -3'
miRNA:   3'- -GCU---UGGCUUaGUAGACG-------------GCUCGUCGc -5'
22632 5' -53 NC_005091.1 + 20016 0.71 0.575559
Target:  5'- aCGAACgGcguuAUCA-CUGCCGugGGCGGCGa -3'
miRNA:   3'- -GCUUGgCu---UAGUaGACGGC--UCGUCGC- -5'
22632 5' -53 NC_005091.1 + 23372 0.71 0.54283
Target:  5'- cCGGugC-AGUCGUCggucaGCCGGGCGGCa -3'
miRNA:   3'- -GCUugGcUUAGUAGa----CGGCUCGUCGc -5'
22632 5' -53 NC_005091.1 + 53351 0.72 0.520287
Target:  5'- aCGAGCCGGGcCAUUgugGCCgccgccuGAGCAGCa -3'
miRNA:   3'- -GCUUGGCUUaGUAGa--CGG-------CUCGUCGc -5'
22632 5' -53 NC_005091.1 + 11010 0.72 0.510737
Target:  5'- cCGGcuucGCCgGggUCGcUUUGCCGGGCGGCu -3'
miRNA:   3'- -GCU----UGG-CuuAGU-AGACGGCUCGUCGc -5'
22632 5' -53 NC_005091.1 + 22930 0.72 0.500214
Target:  5'- aGcAAUCGAAUauggCgGCCGAGCAGCGg -3'
miRNA:   3'- gC-UUGGCUUAgua-GaCGGCUCGUCGC- -5'
22632 5' -53 NC_005091.1 + 51960 0.73 0.469245
Target:  5'- aCGAGCCG--UCGUUUGCCGAuGCGcucGCGa -3'
miRNA:   3'- -GCUUGGCuuAGUAGACGGCU-CGU---CGC- -5'
22632 5' -53 NC_005091.1 + 1116 0.73 0.429547
Target:  5'- cCGAAgCGAAUCucgcguuccGUCguauugacGCCGAGCAGCGc -3'
miRNA:   3'- -GCUUgGCUUAG---------UAGa-------CGGCUCGUCGC- -5'
22632 5' -53 NC_005091.1 + 12967 0.78 0.231778
Target:  5'- uGGGCCacGGUCGUCcggGCCGAGCGGCGu -3'
miRNA:   3'- gCUUGGc-UUAGUAGa--CGGCUCGUCGC- -5'
22632 5' -53 NC_005091.1 + 46636 1.09 0.001969
Target:  5'- uCGAACCGAAUCAUCUGCCGAGCAGCGu -3'
miRNA:   3'- -GCUUGGCUUAGUAGACGGCUCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.