miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
22633	3'	-51.7	NC_005091.1	+	21795	0.66	0.903407
	Target:  5'- uGACGCCCuucgugucgGUCAUGUgGUUGAucucuACGc -3' miRNA:   3'- -CUGCGGG---------UAGUACAgCGACUucu--UGC- -5'
22633	3'	-51.7	NC_005091.1	+	14427	0.66	0.903407
	Target:  5'- cGACGCCUAUCGauUCGCcGggGucugGCa -3' miRNA:   3'- -CUGCGGGUAGUacAGCGaCuuCu---UGc -5'
22633	3'	-51.7	NC_005091.1	+	31278	0.66	0.896353
	Target:  5'- --aGCCgAUCAucggcggcaUGUCGUUGcAGGAGCGc -3' miRNA:   3'- cugCGGgUAGU---------ACAGCGAC-UUCUUGC- -5'
22633	3'	-51.7	NC_005091.1	+	45086	0.67	0.847494
	Target:  5'- uAUGCCCG-CAugguucgaugcgcUGUCGCcgGAAGAGCa -3' miRNA:   3'- cUGCGGGUaGU-------------ACAGCGa-CUUCUUGc -5'
22633	3'	-51.7	NC_005091.1	+	54513	0.67	0.839496
	Target:  5'- -uCGCCCGcuuUCAUGUCGCccauGAAUGa -3' miRNA:   3'- cuGCGGGU---AGUACAGCGacuuCUUGC- -5'
22633	3'	-51.7	NC_005091.1	+	53070	0.68	0.801812
	Target:  5'- uGCGCCgGUCAUGgugcgggguUCGCUGAucgcggcGAGCa -3' miRNA:   3'- cUGCGGgUAGUAC---------AGCGACUu------CUUGc -5'
22633	3'	-51.7	NC_005091.1	+	11755	0.68	0.791899
	Target:  5'- -cCGCgCCAUCGaGcCGCUGAAGGccgGCGa -3' miRNA:   3'- cuGCG-GGUAGUaCaGCGACUUCU---UGC- -5'
22633	3'	-51.7	NC_005091.1	+	1472	0.7	0.696273
	Target:  5'- -cCGCCCAUCGg--CGCgaacagGAGGAACa -3' miRNA:   3'- cuGCGGGUAGUacaGCGa-----CUUCUUGc -5'
22633	3'	-51.7	NC_005091.1	+	37769	0.71	0.614391
	Target:  5'- aGAUGCaCCAUCGagaccugccgccgaUGUUGCUGAAGGAa- -3' miRNA:   3'- -CUGCG-GGUAGU--------------ACAGCGACUUCUUgc -5'
22633	3'	-51.7	NC_005091.1	+	47165	0.96	0.018911
	Target:  5'- uGACGCCCAUCAUGU-GCUGAAGAACGu -3' miRNA:   3'- -CUGCGGGUAGUACAgCGACUUCUUGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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