miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22633 5' -55.9 NC_005091.1 + 5414 0.66 0.720673
Target:  5'- uUCCGUcaguUCCUGCGGCAgcgcgacCGGUUGCUUAc -3'
miRNA:   3'- -AGGCAu---GGGACGUUGU-------GCUAGCGGGU- -5'
22633 5' -55.9 NC_005091.1 + 26031 0.66 0.700435
Target:  5'- -aCGUACgCCgugGCgAGCGCGAUCaGCUCGc -3'
miRNA:   3'- agGCAUG-GGa--CG-UUGUGCUAG-CGGGU- -5'
22633 5' -55.9 NC_005091.1 + 23404 0.66 0.700435
Target:  5'- gCCGaacagACCgaGCAGCGCcAUCGCCg- -3'
miRNA:   3'- aGGCa----UGGgaCGUUGUGcUAGCGGgu -5'
22633 5' -55.9 NC_005091.1 + 8722 0.66 0.689684
Target:  5'- aCCGagaaUGCCg-GguGCAUGAUCGCCUg -3'
miRNA:   3'- aGGC----AUGGgaCguUGUGCUAGCGGGu -5'
22633 5' -55.9 NC_005091.1 + 35446 0.66 0.675628
Target:  5'- aUCgGUGCuCCUGCugaccgagaaguucGACugGucGUCGCCCc -3'
miRNA:   3'- -AGgCAUG-GGACG--------------UUGugC--UAGCGGGu -5'
22633 5' -55.9 NC_005091.1 + 40295 0.67 0.657147
Target:  5'- aUCCGgcgACCgCU-CGGCAgGAUCGCCaCGa -3'
miRNA:   3'- -AGGCa--UGG-GAcGUUGUgCUAGCGG-GU- -5'
22633 5' -55.9 NC_005091.1 + 35076 0.67 0.646241
Target:  5'- aCUGcgGCCCgUGCGGCgGCGGUCGUuCCAa -3'
miRNA:   3'- aGGCa-UGGG-ACGUUG-UGCUAGCG-GGU- -5'
22633 5' -55.9 NC_005091.1 + 23225 0.67 0.646241
Target:  5'- aCCGUGCCgCUGUgguAGCGCGGcgCGUUCGc -3'
miRNA:   3'- aGGCAUGG-GACG---UUGUGCUa-GCGGGU- -5'
22633 5' -55.9 NC_005091.1 + 31830 0.67 0.624402
Target:  5'- aCCGUGgCa-GCAGcCACGuUCGCCCGc -3'
miRNA:   3'- aGGCAUgGgaCGUU-GUGCuAGCGGGU- -5'
22633 5' -55.9 NC_005091.1 + 9233 0.67 0.613488
Target:  5'- uUCCGgcggugcgGCCCUGCGAaggGCGAcCGgCCGg -3'
miRNA:   3'- -AGGCa-------UGGGACGUUg--UGCUaGCgGGU- -5'
22633 5' -55.9 NC_005091.1 + 20379 0.67 0.613488
Target:  5'- gCCGUACaggaacucaaCgaGCAGgaGCGGUCGCCCGu -3'
miRNA:   3'- aGGCAUG----------GgaCGUUg-UGCUAGCGGGU- -5'
22633 5' -55.9 NC_005091.1 + 49569 0.67 0.613488
Target:  5'- cUUCGUACcgCCUGCGcgguuugaaccGCAgGAUCGCCgGg -3'
miRNA:   3'- -AGGCAUG--GGACGU-----------UGUgCUAGCGGgU- -5'
22633 5' -55.9 NC_005091.1 + 54509 0.67 0.613488
Target:  5'- aCCGUcGCCC-GCuuuCAUG-UCGCCCAu -3'
miRNA:   3'- aGGCA-UGGGaCGuu-GUGCuAGCGGGU- -5'
22633 5' -55.9 NC_005091.1 + 24682 0.67 0.601502
Target:  5'- cUCCGUcgacagggcgcgcGCCUUGCAACgACGc-CGCCCc -3'
miRNA:   3'- -AGGCA-------------UGGGACGUUG-UGCuaGCGGGu -5'
22633 5' -55.9 NC_005091.1 + 23489 0.68 0.580877
Target:  5'- -gCGaACUgUGCGAC-CGAUUGCCCGa -3'
miRNA:   3'- agGCaUGGgACGUUGuGCUAGCGGGU- -5'
22633 5' -55.9 NC_005091.1 + 25718 0.69 0.538015
Target:  5'- -aCGUGCCCUGCAuguCAUccgCGCUCAu -3'
miRNA:   3'- agGCAUGGGACGUu--GUGcuaGCGGGU- -5'
22633 5' -55.9 NC_005091.1 + 26906 0.69 0.506594
Target:  5'- gUCCGU-CCCUGCGguuGCGGccuUCGCCUg -3'
miRNA:   3'- -AGGCAuGGGACGUug-UGCU---AGCGGGu -5'
22633 5' -55.9 NC_005091.1 + 20207 0.7 0.475981
Target:  5'- uUCCGcGCCaCUGCuuCACGAU-GUCCAg -3'
miRNA:   3'- -AGGCaUGG-GACGuuGUGCUAgCGGGU- -5'
22633 5' -55.9 NC_005091.1 + 54827 0.71 0.41771
Target:  5'- uUCCG-ACCCguccggGCGGCGCcAUCaGCCCAa -3'
miRNA:   3'- -AGGCaUGGGa-----CGUUGUGcUAG-CGGGU- -5'
22633 5' -55.9 NC_005091.1 + 12246 0.72 0.37261
Target:  5'- aUCCa-GCUCUGCAACACGA-CGCCa- -3'
miRNA:   3'- -AGGcaUGGGACGUUGUGCUaGCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.