miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22634 5' -56.9 NC_005091.1 + 39970 0.66 0.59643
Target:  5'- gGCGCA-GCcgGAUGGUcgGCCg--- -3'
miRNA:   3'- aCGCGUgCGuaCUGCCGuaCGGacau -5'
22634 5' -56.9 NC_005091.1 + 3444 0.66 0.585418
Target:  5'- aGCGaCACGa---GCGGCAUGCCUu-- -3'
miRNA:   3'- aCGC-GUGCguacUGCCGUACGGAcau -5'
22634 5' -56.9 NC_005091.1 + 52027 0.66 0.585418
Target:  5'- aGCGCAcucggcuacuCGCGUcACGGCGUGUugCUGUu -3'
miRNA:   3'- aCGCGU----------GCGUAcUGCCGUACG--GACAu -5'
22634 5' -56.9 NC_005091.1 + 50735 0.67 0.520465
Target:  5'- aGcCGCGCGCAcGACGGCcgcacGCUUGa- -3'
miRNA:   3'- aC-GCGUGCGUaCUGCCGua---CGGACau -5'
22634 5' -56.9 NC_005091.1 + 27879 0.67 0.499417
Target:  5'- aGCGCGUGUAccucGACGGCcgGCCgaUGUAa -3'
miRNA:   3'- aCGCGUGCGUa---CUGCCGuaCGG--ACAU- -5'
22634 5' -56.9 NC_005091.1 + 44635 0.68 0.490068
Target:  5'- gGCGCucgaagaagACGCGggcggcgacgaaggcGACGGCAgcgacgGCCUGUAa -3'
miRNA:   3'- aCGCG---------UGCGUa--------------CUGCCGUa-----CGGACAU- -5'
22634 5' -56.9 NC_005091.1 + 39339 0.68 0.475692
Target:  5'- aGCGaCACGCA--GCGGCgcgaucacgagacaGUGCUUGUAu -3'
miRNA:   3'- aCGC-GUGCGUacUGCCG--------------UACGGACAU- -5'
22634 5' -56.9 NC_005091.1 + 52691 0.68 0.468582
Target:  5'- cGCGCACGCcggccagugcGACGGCuuUGCgCUGg- -3'
miRNA:   3'- aCGCGUGCGua--------CUGCCGu-ACG-GACau -5'
22634 5' -56.9 NC_005091.1 + 28268 0.69 0.419482
Target:  5'- gGCGaCGCGC-UGGCGGCuUGCgUGa- -3'
miRNA:   3'- aCGC-GUGCGuACUGCCGuACGgACau -5'
22634 5' -56.9 NC_005091.1 + 22840 0.7 0.353711
Target:  5'- aGCGCACGCGccugaacgccgcgcUGACGGCcgGCg---- -3'
miRNA:   3'- aCGCGUGCGU--------------ACUGCCGuaCGgacau -5'
22634 5' -56.9 NC_005091.1 + 1401 0.7 0.339478
Target:  5'- cGCGC-CGaugGGCGGCAUGCCg--- -3'
miRNA:   3'- aCGCGuGCguaCUGCCGUACGGacau -5'
22634 5' -56.9 NC_005091.1 + 16319 0.71 0.292608
Target:  5'- gGCGCAuCGCAUGcCGGCG-GCCUcGUc -3'
miRNA:   3'- aCGCGU-GCGUACuGCCGUaCGGA-CAu -5'
22634 5' -56.9 NC_005091.1 + 36307 0.72 0.250948
Target:  5'- aUGCGCGaGCGUcGCGGCGUGCCg--- -3'
miRNA:   3'- -ACGCGUgCGUAcUGCCGUACGGacau -5'
22634 5' -56.9 NC_005091.1 + 55994 0.74 0.197762
Target:  5'- cUGCGCACGCAgu-UGGUcgGCCUGc- -3'
miRNA:   3'- -ACGCGUGCGUacuGCCGuaCGGACau -5'
22634 5' -56.9 NC_005091.1 + 48759 1.07 0.000838
Target:  5'- gUGCGCACGCAUGACGGCAUGCCUGUAu -3'
miRNA:   3'- -ACGCGUGCGUACUGCCGUACGGACAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.