miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22635 5' -56 NC_005091.1 + 55556 0.66 0.730832
Target:  5'- gGUCUCGgugaugaagACGugUCcgguuuucgaggACGCcCGGCUGAc -3'
miRNA:   3'- -CAGAGCa--------UGCugAG------------UGCGuGCCGGCU- -5'
22635 5' -56 NC_005091.1 + 46183 0.66 0.720379
Target:  5'- uGUUUCaccaGUACGACggcCACgaGCGCGGCCu- -3'
miRNA:   3'- -CAGAG----CAUGCUGa--GUG--CGUGCCGGcu -5'
22635 5' -56 NC_005091.1 + 31824 0.66 0.719329
Target:  5'- -cCUCGgACGGCUCgcagaagGCGUACGGCa-- -3'
miRNA:   3'- caGAGCaUGCUGAG-------UGCGUGCCGgcu -5'
22635 5' -56 NC_005091.1 + 34426 0.66 0.709842
Target:  5'- ----aGUACGACaa--GCGCGGCCGGc -3'
miRNA:   3'- cagagCAUGCUGagugCGUGCCGGCU- -5'
22635 5' -56 NC_005091.1 + 45791 0.66 0.709842
Target:  5'- ----aGUAgcCGGCgcgGCGCGCGGCCGAc -3'
miRNA:   3'- cagagCAU--GCUGag-UGCGUGCCGGCU- -5'
22635 5' -56 NC_005091.1 + 34847 0.66 0.709842
Target:  5'- --aUCGc-CGAC--GCGCGCGGCCGGg -3'
miRNA:   3'- cagAGCauGCUGagUGCGUGCCGGCU- -5'
22635 5' -56 NC_005091.1 + 32592 0.66 0.709842
Target:  5'- uUCgUCGUACGAggcgUUCACGU-CGGCCuGAa -3'
miRNA:   3'- cAG-AGCAUGCU----GAGUGCGuGCCGG-CU- -5'
22635 5' -56 NC_005091.1 + 7397 0.66 0.699231
Target:  5'- gGUCUgGUGCGcCUCG-GCuuGGUCGAg -3'
miRNA:   3'- -CAGAgCAUGCuGAGUgCGugCCGGCU- -5'
22635 5' -56 NC_005091.1 + 17536 0.66 0.688557
Target:  5'- --aUCGuUGCGAag-AUGCGCGGCCGGg -3'
miRNA:   3'- cagAGC-AUGCUgagUGCGUGCCGGCU- -5'
22635 5' -56 NC_005091.1 + 26473 0.66 0.67783
Target:  5'- -gCUCG-GCGACUUGCGCuucaaGGCCa- -3'
miRNA:   3'- caGAGCaUGCUGAGUGCGug---CCGGcu -5'
22635 5' -56 NC_005091.1 + 48658 0.67 0.667061
Target:  5'- uGUCUcCGUGucacUGGCUgGCGCGCaGGcCCGAu -3'
miRNA:   3'- -CAGA-GCAU----GCUGAgUGCGUG-CC-GGCU- -5'
22635 5' -56 NC_005091.1 + 28232 0.67 0.667061
Target:  5'- aUUUCGacgcgaagACGACggacgcCACGC-CGGCCGAa -3'
miRNA:   3'- cAGAGCa-------UGCUGa-----GUGCGuGCCGGCU- -5'
22635 5' -56 NC_005091.1 + 17630 0.67 0.667061
Target:  5'- aUCUCGUcgccgauaaucGCGGC-CAUGCcCGGCuCGAu -3'
miRNA:   3'- cAGAGCA-----------UGCUGaGUGCGuGCCG-GCU- -5'
22635 5' -56 NC_005091.1 + 26629 0.67 0.667061
Target:  5'- -gCUUGU-CGAgUUCACGgGCGGUCGAu -3'
miRNA:   3'- caGAGCAuGCU-GAGUGCgUGCCGGCU- -5'
22635 5' -56 NC_005091.1 + 35099 0.67 0.65626
Target:  5'- uUCUgGUccACGA-UCACGCG-GGCCGAg -3'
miRNA:   3'- cAGAgCA--UGCUgAGUGCGUgCCGGCU- -5'
22635 5' -56 NC_005091.1 + 14328 0.67 0.65626
Target:  5'- gGUCggCGUACGAC--ACGCaagGCGGCuCGAc -3'
miRNA:   3'- -CAGa-GCAUGCUGagUGCG---UGCCG-GCU- -5'
22635 5' -56 NC_005091.1 + 50821 0.67 0.645438
Target:  5'- aUCaagCGUGCGGCcgucgUGCGCGCGGCUa- -3'
miRNA:   3'- cAGa--GCAUGCUGa----GUGCGUGCCGGcu -5'
22635 5' -56 NC_005091.1 + 24886 0.67 0.634604
Target:  5'- -cCUCG-GCGGCcugCGCaGCACGGCgGAa -3'
miRNA:   3'- caGAGCaUGCUGa--GUG-CGUGCCGgCU- -5'
22635 5' -56 NC_005091.1 + 34449 0.68 0.612939
Target:  5'- gGUCgCGUACGGCcgguUCGcCGCGCGGUCc- -3'
miRNA:   3'- -CAGaGCAUGCUG----AGU-GCGUGCCGGcu -5'
22635 5' -56 NC_005091.1 + 20347 0.68 0.591338
Target:  5'- -aCUCGcaaaGCGGCg-ACGCGuCGGCCGAu -3'
miRNA:   3'- caGAGCa---UGCUGagUGCGU-GCCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.